Maintenance - Mise à jour mensuelle Lundi 6 Avril 2020 entre 7h00 et 9h00

  1. 08 Jan, 2020 2 commits
  2. 07 Jan, 2020 1 commit
  3. 19 Dec, 2019 1 commit
    • Romain Therville's avatar
      Utils.py update · edcc9cc2
      Romain Therville authored
      The get_directories_structure_and_content() function has been reworked
      to make the projects, runs and analyzes names normalization way more
      consistent. This will solve the differences between sources and
      destinations in this function.
      
      issue #153
      edcc9cc2
  4. 28 Nov, 2019 2 commits
    • Romain Therville's avatar
      Huge update for the new migration workflow: · db1b75b8
      Romain Therville authored
      - New name : switch_space_id.
      - The given space id is checked in application.properties.
      - Most of the treatments have been moved to a "components" folder,
      allowing us to create easily a new "migrate_several_projects" (or
      "bulk_project_migration") later.
      - The workflow can be launched from the single project view on the nG6
      website, when logged a superadmin user.
      - The project's space_id is visible to everyone on the single project
      view.
      - A warning indicating that the migration updates the retention has been
      added to the workflow's form in single project view.
      - More logs in ng6.log, and the new log file MoveProject.stdout. (path
      exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout)
      - CSS updates for the project views.
      - For new space_ids, the <space_id>/run and <space_id>/analyze
      directories will be created if missing.
      
      
      Issue#129
      db1b75b8
    • ckuchly's avatar
      #143 : modified files who is analysed by fastqc, contaminationSearch and · 9b9e0e65
      ckuchly authored
      FastqIlluminaFilter.
      9b9e0e65
  5. 19 Nov, 2019 1 commit
  6. 18 Nov, 2019 1 commit
    • Romain Therville's avatar
      Update to make the switch_space_id work. · 7c169bce
      Romain Therville authored
      - The type ng6space has been debugged.
      - The workflow now generates a .stdout trace file.
      - The synthax has changed: python3.4
      /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchspaceid
      --project-id 1293 --space-id seqoccin --admin-login CTD
      
      issue #129
      7c169bce
  7. 04 Nov, 2019 2 commits
  8. 16 Oct, 2019 1 commit
  9. 14 Oct, 2019 1 commit
  10. 09 Oct, 2019 1 commit
  11. 08 Oct, 2019 1 commit
    • Romain Therville's avatar
      Update for issue #129 · f9366424
      Romain Therville authored
      The srcipt had to be reworked, the retention period was relative to
      "today", we wanted it relative to "the run or analysis's creation date".
      Also, a message is raised and the process is stopped if the project
      already belongs to the given space_id.
      
      issue #129
      f9366424
  12. 07 Oct, 2019 1 commit
    • Romain Therville's avatar
      New "switch_projet_space_id" workflow, update for t3MySQLdb.py. · 2e82534c
      Romain Therville authored
      The new workflow allows to migrate a project to a space_id defined in
      application.properties.
      Every run and analyse gets a new retention and new path, the directories
      and files are moved, the old directories are removed.
      
      Use:
      python3.4 /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py
      switchprojectspaceid --project-id 1292 --space-id default --admin-login
      CTD
      
      issue #129
      2e82534c
  13. 26 Sep, 2019 1 commit
  14. 06 Sep, 2019 3 commits
  15. 05 Sep, 2019 1 commit
  16. 04 Sep, 2019 1 commit
  17. 30 Aug, 2019 1 commit
    • Romain Therville's avatar
      issue#86 · dffa2ab1
      Romain Therville authored
      Instead of being deleted, special characters are replaced with '_'.
      dffa2ab1
  18. 23 Aug, 2019 2 commits
  19. 09 Aug, 2019 2 commits
  20. 08 Aug, 2019 2 commits
  21. 01 Aug, 2019 1 commit
  22. 26 Jul, 2019 5 commits
  23. 30 Apr, 2019 2 commits
  24. 15 Apr, 2019 1 commit
  25. 05 Apr, 2019 1 commit
  26. 29 Mar, 2019 1 commit
  27. 11 Feb, 2019 1 commit