Maintenance - Mise à jour mensuelle Lundi 6 Avril 2020 entre 7h00 et 9h00

Commit dd430e29 authored by Celine Noirot's avatar Celine Noirot

add __init__.py dans components directory

parent 03857d2b
......@@ -117,7 +117,7 @@
A ng6workflow is a <code>Python package</code> defined by a folder with a <code>__init__.py</code> file.
</p>
<p>
Within NG6 sources, add a package named <code>quickstart</code> and within this package create an other package named <code>components</code>
Within NG6 sources, add a package named <code>quickstart</code> and within this package create an other package named <code>components</code> (with <code>__init__.py</code> inside)
where all the analyses and components specific to <code>quickstart</code> will be stored. Note that if the analysis is shared by multiple workflows, you should
add it in the <code>workflows/components/</code> folder. The template files for the visualization will be created in <code>ui/nG6/pi1/analyses/</code>.
These templates can have associated javascript files that must be created in the same directory.
......@@ -149,6 +149,7 @@
│ └── QFastQC.tpl [ QFastQC template file ]
├── workflows/
│ ├── components/
│ │ ├── __init__.py [ empty __init__.py file to make this directory a package ]
│ ├── extparsers/
│ ├── quickstart/ [ the folder quickstart ]
│ │ ├── components/ [ the folder components where the analysis will be]
......@@ -198,7 +199,7 @@
<h2>QilluminaFilter analysis</h2>
<p>
The recent version of Illumina's CASAVA pipeline (Version 1.8) produces FASTQ files with both reads that pass filtering and reads that don't.
The version of Illumina's CASAVA pipeline (Version 1.8) produces FASTQ files with both reads that pass filtering and reads that don't.
The new READ-ID contains many new fields, one of them indicates whether the read is filtered or not. The <code>fastq_illumina_filter</code> program can
filter FASTQ files produced by CASAVA 1.8, and keep/discard reads based on this filter flag.
</p>
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