Maintenance - Mise à jour mensuelle Lundi 6 Avril 2020 entre 7h00 et 9h00

Commit a593ec5e authored by Penom Nom's avatar Penom Nom

documentation update, advanced configuration

parent d79ccbe6
This diff is collapsed.
......@@ -280,7 +280,7 @@ class CasavaNG6Workflow(NG6Workflow):
def __add_sample_parameters__(self):
self.add_input_directory("casava_directory", "Path to the CASAVA directory to use", required=True, get_files_fn=get_files_from_casava, group="Sample description")
self.add_parameter("casava_lane", "The lane number to be retrieved from the casava directory", required=True, type=int, group="Sample description")
self.add_parameter('casava_project', 'The name of the project to retrieve in casava directory. The default name is the name of the project', group="Sample description")
self.add_parameter('casava_project', 'The name of the project to retrieve in casava directory. The default name is the name of the nG6 project', group="Sample description")
self.add_parameter('mismatch_index', 'Set this value to true if the index sequence in the sample fastq files allows at least 1 mismatch', type ='bool', group="Sample description")
......
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