Commit 11250b33 authored by Maxime Manno's avatar Maxime Manno 🍜

Merge branch 'ng6_ontqc-update' into 'master'

Add N10 read lenght to the ont_qc run status

See merge request !27
parents ce861266 a141658d
......@@ -386,6 +386,10 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<li><strong>N90 read length</strong> :
90% of all bases come from reads longer than this value.
</li>
</li>
<li><strong>N10 read length</strong> :
10% of all bases come from reads longer than this value.
</li>
<li><strong>Mean read quality</strong> :
The mean quality (qscore ONT) for this Flow Cell.
</li>
......
......@@ -73,6 +73,7 @@ class Run_stats (Analysis):
if parts[0] == "mean_read_length": stats["mean_read_length"] = parts[1]
if parts[0] == "N50_read_length": stats["N50_read_length"] = parts[1]
if parts[0] == "N90_read_length": stats["N90_read_length"] = parts[1]
if parts[0] == "N10_read_length": stats["N10_read_length"] = parts[1]
if parts[0] == "mean_read_quality": stats["mean_read_quality"] = parts[1]
if parts[0] == "mean_yield_per_sec": stats["mean_yield_per_sec"] = parts[1]
if parts[0] == "longread1": stats["longread1"] = parts[1]
......@@ -86,6 +87,7 @@ class Run_stats (Analysis):
if parts[0] == "mean_read_length_Q7": stats["mean_read_length_Q7"] = parts[1]
if parts[0] == "N50_read_length_Q7": stats["N50_read_length_Q7"] = parts[1]
if parts[0] == "N90_read_length_Q7": stats["N90_read_length_Q7"] = parts[1]
if parts[0] == "N10_read_length_Q7": stats["N10_read_length_Q7"] = parts[1]
if parts[0] == "mean_read_quality_Q7": stats["mean_read_quality_Q7"] = parts[1]
if parts[0] == "mean_yield_per_sec_Q7": stats["mean_yield_per_sec_Q7"] = parts[1]
if parts[0] == "longread1_Q7": stats["longread1_Q7"] = parts[1]
......@@ -99,6 +101,7 @@ class Run_stats (Analysis):
if parts[0] == "mean_read_length_Q9": stats["mean_read_length_Q9"] = parts[1]
if parts[0] == "N50_read_length_Q9": stats["N50_read_length_Q9"] = parts[1]
if parts[0] == "N90_read_length_Q9": stats["N90_read_length_Q9"] = parts[1]
if parts[0] == "N10_read_length_Q9": stats["N10_read_length_Q9"] = parts[1]
if parts[0] == "mean_read_quality_Q9": stats["mean_read_quality_Q9"] = parts[1]
if parts[0] == "mean_yield_per_sec_Q9": stats["mean_yield_per_sec_Q9"] = parts[1]
if parts[0] == "longread1_Q9": stats["longread1_Q9"] = parts[1]
......@@ -165,6 +168,7 @@ class Run_stats (Analysis):
"mean_read_length",
"N50_read_length",
"N90_read_length",
"N10_read_length",
"mean_read_quality",
"mean_yield_per_sec",
"longread1",
......@@ -183,6 +187,7 @@ class Run_stats (Analysis):
"mean_read_length_Q7",
"N50_read_length_Q7",
"N90_read_length_Q7",
"N10_read_length_Q7",
"mean_read_quality_Q7",
"mean_yield_per_sec_Q7",
"longread1_Q7",
......@@ -201,6 +206,7 @@ class Run_stats (Analysis):
"mean_read_length_Q9",
"N50_read_length_Q9",
"N90_read_length_Q9",
"N10_read_length_Q9",
"mean_read_quality_Q9",
"mean_yield_per_sec_Q9",
"longread1_Q9",
......
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