ng6 merge requestshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests2024-03-14T12:30:11+01:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/156update project list to include projects with only analyses2024-03-14T12:30:11+01:00Gerald Salingerald.salin@inra.frupdate project list to include projects with only analysesV3.4.6Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/155Display projects with new runs added, first2024-03-11T10:52:29+01:00Gerald Salingerald.salin@inra.frDisplay projects with new runs added, firstV3.4.6Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/154add optional run parameter for NGL-Bi run code storage2024-03-05T17:02:37+01:00Gerald Salingerald.salin@inra.fradd optional run parameter for NGL-Bi run code storage#245#245V3.4.5Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/153remove archive download option2024-01-24T09:58:59+01:00Gerald Salingerald.salin@inra.frremove archive download option#249#249V3.4.5Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/152remove os.path.koin for server2023-11-14T05:55:07+01:00Gerald Salingerald.salin@inra.frremove os.path.koin for serverhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/151copy bash script on remote server to be able to execute it2023-11-14T05:40:42+01:00Gerald Salingerald.salin@inra.frcopy bash script on remote server to be able to execute it#246#246https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/150copy bash script on remote server to be able to execute it for symbolic links2023-11-14T05:05:08+01:00Gerald Salingerald.salin@inra.frcopy bash script on remote server to be able to execute it for symbolic links#246#246V3.4.4Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/149update version2023-10-04T10:47:42+02:00Gerald Salingerald.salin@inra.frupdate versionV3.4.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/148allow to create symlinks on genobioinfo2023-10-04T10:25:45+02:00Gerald Salingerald.salin@inra.frallow to create symlinks on genobioinfo#246#246V3.4.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/146Merge branch issue#240.2 with master2022-12-20T14:35:55+01:00Romain ThervilleMerge branch issue#240.2 with masterUpdate to the purge process
- Do not send purge alert mails if the demand only contains hidden
elements. (Issue #240)
- The hidden elements should appear in the admin area, in the DB demand,
should be purged, but not appear in any emai...Update to the purge process
- Do not send purge alert mails if the demand only contains hidden
elements. (Issue #240)
- The hidden elements should appear in the admin area, in the DB demand,
should be purged, but not appear in any email. (Issue #240)
Issue #240
This commit already includes the changes from the following commit :
bd50bd327d93aa4ffd66cd14cea4b673d41e0f3eV3.4.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/145#242 implement phpseclib for ssh connexion2022-12-16T16:20:52+01:00Gerald Salingerald.salin@inra.fr#242 implement phpseclib for ssh connexionV3.4.1Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/142typo3 V112022-10-07T15:59:20+02:00Gerald Salingerald.salin@inra.frtypo3 V11typo3 V11typo3 V11https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/141update to typo3 V112022-10-07T15:45:10+02:00Gerald Salingerald.salin@inra.frupdate to typo3 V11update to typo3 V11update to typo3 V11V3.4Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/140Merge branch issue#228.2 with master2022-06-09T09:50:46+02:00Romain ThervilleMerge branch issue#228.2 with masterUpdate to ng6.php
- unhiding a run/analysis now only impacts the elements downward, an not
upward anymore.
Issue #228Update to ng6.php
- unhiding a run/analysis now only impacts the elements downward, an not
upward anymore.
Issue #228V3.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/139Revert "Merge branch 'issue#228' into 'master'"2022-06-09T09:50:24+02:00Romain ThervilleRevert "Merge branch 'issue#228' into 'master'"This reverts merge request !138
issue #228This reverts merge request !138
issue #228V3.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/138Merge branch issue#228 with master2022-06-08T10:05:27+02:00Romain ThervilleMerge branch issue#228 with masterUpdate to the hide/unhide features
- Unhiding a run will no longer unhide the analyses below.
- Unhiding a project will no longer unhide the runs and analyses below.
- Unhiding an analysis will no longer unhide the run and project above...Update to the hide/unhide features
- Unhiding a run will no longer unhide the analyses below.
- Unhiding a project will no longer unhide the runs and analyses below.
- Unhiding an analysis will no longer unhide the run and project above.
Issue #228V3.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/137Add HTML repport for ONT run2022-05-11T10:34:27+02:00Jules SabbanAdd HTML repport for ONT runV3.3Jules SabbanJules Sabbanhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/136Update to the purge process to ignore hidden elements2022-04-26T13:46:43+02:00Romain ThervilleUpdate to the purge process to ignore hidden elementsUpdate to the purge process
- The hidden runs and analyzes are now excluded from the purge demands
and the mail. They will from now on be purged semi-manually.
Issue #225Update to the purge process
- The hidden runs and analyzes are now excluded from the purge demands
and the mail. They will from now on be purged semi-manually.
Issue #225V3.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/135Removing the size display from the project and run pages2022-04-26T13:46:36+02:00Romain ThervilleRemoving the size display from the project and run pagesUpdate to the project and run pages
- This size computing and displaying has been removed from those pages.
Issue #224Update to the project and run pages
- This size computing and displaying has been removed from those pages.
Issue #224V3.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/134Modification of BWA algo #2212022-02-14T09:43:27+01:00Jules SabbanModification of BWA algo #221Change BWA algo `aln` to `mem`.Change BWA algo `aln` to `mem`.Jules SabbanJules Sabban