ng6 merge requestshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests2019-01-08T15:35:24+01:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/19Update get-version : #902019-01-08T15:35:24+01:00Maxime MannoUpdate get-version : #90popen a shell command with module load before the porechop commandpopen a shell command with module load before the porechop commandV3.2.3Maxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/18Count reads and bases too early2019-01-04T10:50:13+01:00Gerald Salingerald.salin@inra.frCount reads and bases too earlyV3.2.2Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/17Ng6 ont qc improvement2019-01-03T17:16:16+01:00Maxime MannoNg6 ont qc improvementV3.2.2Maxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/16#99 delete data for a purge demand somtimes fails2018-12-20T17:40:14+01:00Gerald Salingerald.salin@inra.fr#99 delete data for a purge demand somtimes failsV3.2.1Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/15User management2018-12-20T15:44:19+01:00Gerald Salingerald.salin@inra.frUser managementupdate user not workingupdate user not workinghttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/14Long sample list is still a problem. Please do not accept this merge request!2018-12-20T13:58:24+01:00Audrey GibertLong sample list is still a problem. Please do not accept this merge request!issue #97
issue #96 which merging demand has not been accepted yetissue #97
issue #96 which merging demand has not been accepted yetAudrey GibertAudrey Giberthttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/12Methylseq2018-09-28T16:22:14+02:00Audrey GibertMethylseqhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/11Ng6 slurm2018-09-20T14:52:19+02:00Gerald Salingerald.salin@inra.frNg6 slurmng6 with slurm
optimization of some data processing for a better efficiency (work on a
data subset, parallelization...)
update jflow version
less duplication of data for illumina pipelines
upgrade typo3 plugin to be compatible with the l...ng6 with slurm
optimization of some data processing for a better efficiency (work on a
data subset, parallelization...)
update jflow version
less duplication of data for illumina pipelines
upgrade typo3 plugin to be compatible with the last LTR typo3 version V8
and php 7
add project and data management, allowing to delete data old data (based
on retention date)V3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/10N g6 slurm rules2018-09-05T17:20:50+02:00Celine NoirotN g6 slurm rulesV3.2 - SlurmCeline NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/8Upgrade jflow v3-git2018-08-10T16:50:17+02:00Celine NoirotUpgrade jflow v3-gitCeline NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/6correction array_merge "bug" if no manager are linked to the project2018-08-02T14:47:12+02:00Gerald Salingerald.salin@inra.frcorrection array_merge "bug" if no manager are linked to the projecthttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/5Ng6 software updates2018-08-02T13:14:22+02:00Maxime MannoNg6 software updatesV3.2 - SlurmMaxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/4Dev purge2018-07-18T15:48:10+02:00Claire KuchlyDev purgeFinal developpement for purge administration.Final developpement for purge administration.V3.1 - PurgeClaire KuchlyClaire Kuchlyhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/3Test mmanno2018-08-01T09:17:36+02:00Maxime MannoTest mmannoAdd fast5archive component and change shell function by shell executionAdd fast5archive component and change shell function by shell executionV3.3 - ONT_QC analysisMaxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/2Test mmanno barcode visu2018-03-13T14:23:11+01:00Maxime MannoTest mmanno barcode visuadd barcoded run visualisation to production codeadd barcoded run visualisation to production codehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/1Update run_stats.py : missing one line2018-01-25T14:27:41+01:00Maxime MannoUpdate run_stats.py : missing one line