ng6 merge requestshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests2020-01-31T12:02:30+01:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/93Merge branch issue#146 with dev2020-01-31T12:02:30+01:00Romain ThervilleMerge branch issue#146 with devUpdate to the admin scripts
This update was made to recover the redirection page id dynamically from
the typo3 template values.
Issue #146Update to the admin scripts
This update was made to recover the redirection page id dynamically from
the typo3 template values.
Issue #146V3.2.7Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/84Merge branch Issue#151 with master2020-01-14T17:15:41+01:00Romain ThervilleMerge branch Issue#151 with masterExact same Merge as !81. I made a mistake when deleting the old one, now the branch is back.
Same commit as d6928bee343303b26bb04673cff0c90088daf05b .
Issue #151Exact same Merge as !81. I made a mistake when deleting the old one, now the branch is back.
Same commit as d6928bee343303b26bb04673cff0c90088daf05b .
Issue #151V3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/83Merge branch Issue#129 with master2020-01-14T17:15:24+01:00Romain ThervilleMerge branch Issue#129 with master* The switch_space_id workflow can be launched by the current project's admins in the single project view.
* Before running the workflow, we ask a user+pwd to run a test. More infos in this commit: b987a46a5330737ba0cbb8fd9b5bb0605ca01adf* The switch_space_id workflow can be launched by the current project's admins in the single project view.
* Before running the workflow, we ask a user+pwd to run a test. More infos in this commit: b987a46a5330737ba0cbb8fd9b5bb0605ca01adfV3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/82Merge branch Issue#129 with master2020-01-14T13:31:10+01:00Romain ThervilleMerge branch Issue#129 with masterIn the single project view page:
The "switch_space_id" migration workflow is now available to the projects's administrators.In the single project view page:
The "switch_space_id" migration workflow is now available to the projects's administrators.V3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/81Merge branch Issue#151 with master2020-01-14T16:27:37+01:00Romain ThervilleMerge branch Issue#151 with master Update for the page Administration > Mail obsolete project
- The "size" filter criteria has been replaced by a "space" filter.
- The default value is "no filter".
- The result table has one more column, "Project space".
- The search al... Update for the page Administration > Mail obsolete project
- The "size" filter criteria has been replaced by a "space" filter.
- The default value is "no filter".
- The result table has one more column, "Project space".
- The search algorithm has been updated.
WARNING : Check the issue #151 to find the SQL commands to update the
views's structures. Do not forget when pushing the next verion of nG6!V3.2.6https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/77#156 correct style2020-01-09T09:05:43+01:00Celine Noirot#156 correct styleCorrect mains style problemsCorrect mains style problemsV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/73Merge test (isue 126 with master)2019-12-11T14:25:59+01:00Romain ThervilleMerge test (isue 126 with master)This is a test.This is a test.V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/71Merge branch issue#119 with master2019-11-28T17:37:57+01:00Romain ThervilleMerge branch issue#119 with masterMinor visual update for the retention display in the single run and single analysis views.
issue #119Minor visual update for the retention display in the single run and single analysis views.
issue #119V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/70Merge branch Issue#119 with master2019-11-28T17:23:00+01:00Romain ThervilleMerge branch Issue#119 with masterMinor visual fixes. More infos in this commit: 5928040b25307b2c61450eb14a4247f4510ad207Minor visual fixes. More infos in this commit: 5928040b25307b2c61450eb14a4247f4510ad207V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/69Merge branch issue#129 with master2019-11-29T14:02:56+01:00Romain ThervilleMerge branch issue#129 with masterHuge update for the new migration workflow:
- New name : switch_space_id.
- The given space id is checked in application.properties.
- Most of the treatments have been moved to a "components" folder,
allowing us to create easily a new "...Huge update for the new migration workflow:
- New name : switch_space_id.
- The given space id is checked in application.properties.
- Most of the treatments have been moved to a "components" folder,
allowing us to create easily a new "migrate_several_projects" (or
"bulk_project_migration") later.
- The workflow can be launched from the single project view on the nG6
website, when logged a superadmin user.
- The project's space_id is visible to everyone on the single project
view.
- A warning indicating that the migration updates the retention has been
added to the workflow's form in single project view.
- More logs in ng6.log, and the new log file MoveProject.stdout. (path
exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout)
- CSS updates for the project views.
- For new space_ids, the <space_id>/run and <space_id>/analyze
directories will be created if missing.
Issue #129
Commit db1b75b8db3b4e2379c570c9de77061a40d8cc6eV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/67Merge branch issue#119.2 with master2019-11-21T15:47:34+01:00Romain ThervilleMerge branch issue#119.2 with master- Display fixed when the analysis or run's data state is 'extended'
- New line in the analysis and run single element display, indicating
the purge date when the element has been purged.
issue#119- Display fixed when the analysis or run's data state is 'extended'
- New line in the analysis and run single element display, indicating
the purge date when the element has been purged.
issue#119V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/64Merge branch issue#120 with master2019-11-12T13:39:32+01:00Romain ThervilleMerge branch issue#120 with masterfile_put_contents() php logs have been removed.
(Refactoring only commit)
issue #120file_put_contents() php logs have been removed.
(Refactoring only commit)
issue #120V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/61merge branche issue#119 with master2019-10-24T09:50:03+02:00Romain Thervillemerge branche issue#119 with masterUpdate the run and analysis display to add the data state, and retention limit.
commit 20f6a237798424ef1b82cb236ff21fbbaaba03be
issue #119Update the run and analysis display to add the data state, and retention limit.
commit 20f6a237798424ef1b82cb236ff21fbbaaba03be
issue #119V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/59Merge branch issue#126.2 with master2019-10-28T10:29:29+01:00Romain ThervilleMerge branch issue#126.2 with masterSuperadmin users are now allowed to update any user (and their
password), from any project.
issue #126Superadmin users are now allowed to update any user (and their
password), from any project.
issue #126V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/58#134 : debug ng6workflow.py and sample.py2019-10-28T10:29:18+01:00Claire Kuchly#134 : debug ng6workflow.py and sample.pyindex files in casava directory who isn't 10X data.index files in casava directory who isn't 10X data.Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/57Merge branch issue#126 with master2019-10-17T14:40:49+02:00Romain ThervilleMerge branch issue#126 with masterIssue#126
* The superadmin group allows to navigate every project, run and analysis on nG6, hidden or not, with admin rights.
* There is a new table in the admin section ( Administration > Admin management ) that allow superadmins to ad...Issue#126
* The superadmin group allows to navigate every project, run and analysis on nG6, hidden or not, with admin rights.
* There is a new table in the admin section ( Administration > Admin management ) that allow superadmins to add and remove users to and from the superadmin group.
* The group's key is NEVER written directly in the source code, allowing an easier deployment for production use.
* The only requirement outside of the source deployment is to create a group with title = 'ng6_superadmin'. For additional informations, check the SQL file.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/56Merge branch issue#129 with master2019-10-17T10:39:18+02:00Romain ThervilleMerge branch issue#129 with masterEnhancement for the workflow 'switch_project_space_id'
I have moved the DB updates down in the code, to only register
migrations that went well.
issue #129Enhancement for the workflow 'switch_project_space_id'
I have moved the DB updates down in the code, to only register
migrations that went well.
issue #129V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/54merge branch issue#129 with master2019-10-17T09:54:56+02:00Romain Thervillemerge branch issue#129 with masterThe workflow has been re-writed to put most of the BD treatments in the
corresponding classes (Run, Analysis, Project).
issue#129The workflow has been re-writed to put most of the BD treatments in the
corresponding classes (Run, Analysis, Project).
issue#129V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/51Issue#1202019-10-10T15:51:37+02:00Romain ThervilleIssue#120Adds a new retention policy line in the single project view display.
For more informations, check https://forgemia.inra.fr/genotoul-bioinfo/ng6/issues/120 .Adds a new retention policy line in the single project view display.
For more informations, check https://forgemia.inra.fr/genotoul-bioinfo/ng6/issues/120 .V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/50Ng6 slurm 10 x2019-10-10T16:51:42+02:00Claire KuchlyNg6 slurm 10 xAdd illumuna_qc_10X pipelines to ng6Add illumuna_qc_10X pipelines to ng6V3.2.6Romain ThervilleRomain Therville