ng6 merge requestshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests2022-01-07T10:51:49+01:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/133Merge branch issue#218 with master2022-01-07T10:51:49+01:00Romain ThervilleMerge branch issue#218 with masterUpdate to AnalysisTemplate.tpl
In the "download" analysis tab, the .png files are not excluded from the
list anymore.
Issue #218Update to AnalysisTemplate.tpl
In the "download" analysis tab, the .png files are not excluded from the
list anymore.
Issue #218https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/138Merge branch issue#228 with master2022-06-08T10:05:27+02:00Romain ThervilleMerge branch issue#228 with masterUpdate to the hide/unhide features
- Unhiding a run will no longer unhide the analyses below.
- Unhiding a project will no longer unhide the runs and analyses below.
- Unhiding an analysis will no longer unhide the run and project above...Update to the hide/unhide features
- Unhiding a run will no longer unhide the analyses below.
- Unhiding a project will no longer unhide the runs and analyses below.
- Unhiding an analysis will no longer unhide the run and project above.
Issue #228V3.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/140Merge branch issue#228.2 with master2022-06-09T09:50:46+02:00Romain ThervilleMerge branch issue#228.2 with masterUpdate to ng6.php
- unhiding a run/analysis now only impacts the elements downward, an not
upward anymore.
Issue #228Update to ng6.php
- unhiding a run/analysis now only impacts the elements downward, an not
upward anymore.
Issue #228V3.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/146Merge branch issue#240.2 with master2022-12-20T14:35:55+01:00Romain ThervilleMerge branch issue#240.2 with masterUpdate to the purge process
- Do not send purge alert mails if the demand only contains hidden
elements. (Issue #240)
- The hidden elements should appear in the admin area, in the DB demand,
should be purged, but not appear in any emai...Update to the purge process
- Do not send purge alert mails if the demand only contains hidden
elements. (Issue #240)
- The hidden elements should appear in the admin area, in the DB demand,
should be purged, but not appear in any email. (Issue #240)
Issue #240
This commit already includes the changes from the following commit :
bd50bd327d93aa4ffd66cd14cea4b673d41e0f3eV3.4.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/44Merge branch Issue#27 with master2019-09-27T09:14:59+02:00Romain ThervilleMerge branch Issue#27 with masterFixes the analyzes and runs count in the project view, the hidden ones will not be counted.Fixes the analyzes and runs count in the project view, the hidden ones will not be counted.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/39Merge branch Issue#31 with master2019-09-13T11:42:30+02:00Romain ThervilleMerge branch Issue#31 with masterThe purge demand mail has been enhanced with clear names and links for runs an analyzes.The purge demand mail has been enhanced with clear names and links for runs an analyzes.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/38merge branch Issue#8 into master2019-09-13T11:42:51+02:00Romain Thervillemerge branch Issue#8 into masterThe charachter '&' used to "cut" the input password for new users. It has been fixed with an ASCII normalization.The charachter '&' used to "cut" the input password for new users. It has been fixed with an ASCII normalization.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/31Merge branch Issue#86 into master2019-08-30T14:58:23+02:00Romain ThervilleMerge branch Issue#86 into masterRemoves special characters from run names in the downloadsymlink process.Removes special characters from run names in the downloadsymlink process.V3.2.5Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/55merge branch issue#95 with master2019-10-17T09:57:00+02:00Romain Thervillemerge branch issue#95 with masterFix for jflow.min.js
Resolves the addanalysis bug
issue#95, issue#85Fix for jflow.min.js
Resolves the addanalysis bug
issue#95, issue#85V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/79Merge branch Issues#143 with master2020-01-08T17:56:04+01:00Romain ThervilleMerge branch Issues#143 with masterIt's due to bug with the older version :
- just R1 and R2 files are used for analyses (ContaminationSearch, FastQC etc ... )
- R1, R2 and I1 after illuminaFilter if it's done are saved
- not impacted illlumina_qc analysis
Change : ...It's due to bug with the older version :
- just R1 and R2 files are used for analyses (ContaminationSearch, FastQC etc ... )
- R1, R2 and I1 after illuminaFilter if it's done are saved
- not impacted illlumina_qc analysis
Change :
- ng6_workflow
- add new function in utils for catch R1,R2 and I1 files after illuminafilter
- add new files to manage in smarty viszualisation
(Replaces the merge !68)V3.2.6https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/105Merge branch Master with dev2020-04-03T15:14:34+02:00Romain ThervilleMerge branch Master with devApplies the last commits to the dev branch.
Correct issues #171 #175Applies the last commits to the dev branch.
Correct issues #171 #175V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/61merge branche issue#119 with master2019-10-24T09:50:03+02:00Romain Thervillemerge branche issue#119 with masterUpdate the run and analysis display to add the data state, and retention limit.
commit 20f6a237798424ef1b82cb236ff21fbbaaba03be
issue #119Update the run and analysis display to add the data state, and retention limit.
commit 20f6a237798424ef1b82cb236ff21fbbaaba03be
issue #119V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/72Merge issue#129 with master2019-12-09T13:23:18+01:00Romain ThervilleMerge issue#129 with master- I have removed the "local = True" parameter to execute the workflow on
the computing cluster instead of ng6's host.
(It was a test parameter, only meant for testing.)
issue #129- I have removed the "local = True" parameter to execute the workflow on
the computing cluster instead of ng6's host.
(It was a test parameter, only meant for testing.)
issue #129V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/47merge reopened branch 86 with master2019-09-27T09:15:38+02:00Romain Thervillemerge reopened branch 86 with master'0' was not allowed in Run name during download workflow.
(They were replaced with '_'.)
issue#86 reopened'0' was not allowed in Run name during download workflow.
(They were replaced with '_'.)
issue#86 reopenedV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/12Methylseq2018-09-28T16:22:14+02:00Audrey GibertMethylseqhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/104Migration issues2020-04-03T15:08:46+02:00Celine NoirotMigration issuesCorrect issues #171 #175Correct issues #171 #175V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/33Modification for duplicate search and visualisation ok2019-08-30T14:58:57+02:00Claire KuchlyModification for duplicate search and visualisation okV3.2.5Claire KuchlyClaire Kuchlyhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/134Modification of BWA algo #2212022-02-14T09:43:27+01:00Jules SabbanModification of BWA algo #221Change BWA algo `aln` to `mem`.Change BWA algo `aln` to `mem`.Jules SabbanJules Sabbanhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/48N g6 ont demultiplex2019-10-10T13:48:38+02:00Maxime MannoN g6 ont demultiplexV3.2.6Maxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/21N g6 ont qc bug and visu2019-02-11T09:51:01+01:00Maxime MannoN g6 ont qc bug and visuV3.2.3Maxime MannoMaxime Manno