ng6 merge requestshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests2020-01-09T09:05:43+01:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/77#156 correct style2020-01-09T09:05:43+01:00Celine Noirot#156 correct styleCorrect mains style problemsCorrect mains style problemsV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/137Add HTML repport for ONT run2022-05-11T10:34:27+02:00Jules SabbanAdd HTML repport for ONT runV3.3Jules SabbanJules Sabbanhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/27Add N10 read lenght to the ont_qc run status2019-07-25T11:48:23+02:00Maxime MannoAdd N10 read lenght to the ont_qc run statusV3.2.3.1Maxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/154add optional run parameter for NGL-Bi run code storage2024-03-05T17:02:37+01:00Gerald Salingerald.salin@inra.fradd optional run parameter for NGL-Bi run code storage#245#245V3.4.5Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/121conformity to typo3 V9.52021-04-23T11:47:56+02:00Gerald Salingerald.salin@inra.frconformity to typo3 V9.5V3.2.8.1Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/150copy bash script on remote server to be able to execute it for symbolic links2023-11-14T05:05:08+01:00Gerald Salingerald.salin@inra.frcopy bash script on remote server to be able to execute it for symbolic links#246#246V3.4.4Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/4Dev purge2018-07-18T15:48:10+02:00Claire KuchlyDev purgeFinal developpement for purge administration.Final developpement for purge administration.V3.1 - PurgeClaire KuchlyClaire Kuchlyhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/155Display projects with new runs added, first2024-03-11T10:52:29+01:00Gerald Salingerald.salin@inra.frDisplay projects with new runs added, firstV3.4.6Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/34Issue#1162019-08-30T15:45:23+02:00Romain ThervilleIssue#116New custom message indicating expiration dates (runs and analysis)New custom message indicating expiration dates (runs and analysis)V3.2.5https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/51Issue#1202019-10-10T15:51:37+02:00Romain ThervilleIssue#120Adds a new retention policy line in the single project view display.
For more informations, check https://forgemia.inra.fr/genotoul-bioinfo/ng6/issues/120 .Adds a new retention policy line in the single project view display.
For more informations, check https://forgemia.inra.fr/genotoul-bioinfo/ng6/issues/120 .V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/49Issue#1292019-10-09T15:49:56+02:00Romain ThervilleIssue#129**New project space_id migration workflow**
Allows to migrate a project to another space_id, defined in application.properties .
The corresponding files are moved, and the old directories are deleted.
The projects's runs and analyse...**New project space_id migration workflow**
Allows to migrate a project to another space_id, defined in application.properties .
The corresponding files are moved, and the old directories are deleted.
The projects's runs and analyses's retentions are updated according to the values given in application.properties.
If the retention given is a period (not a date), the new retention is relative to the run or analysis's creation date.
**How to do it?**
python3.4 /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchprojectspaceid --project-id 1292 --space-id seqoccin --admin-login CTDV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/118Merge branch Dev with Master2021-03-25T10:51:01+01:00Romain ThervilleMerge branch Dev with MasterMassive update to the purge process
- The multiple "esitoul" email adresses in the purge mail's "cc" field have been fixed. Issue #195
- The hidden runs and analyzes will not appear anymore in the purge mail (and resent purge mail), no...Massive update to the purge process
- The multiple "esitoul" email adresses in the purge mail's "cc" field have been fixed. Issue #195
- The hidden runs and analyzes will not appear anymore in the purge mail (and resent purge mail), nor in the volume counts for each purge demand, but are still recorded in our database. Issues #193, #178
- If a purge demand is already declared for a project (and still pending), and an admin tries to open a new one, a SQL trigger is called to prevent the insertion. This results in a mail sent to the nG6 admins, informing them that no new demand can be openned (for this project) as long as the old one has not been treated. Issue #192V3.2.8Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/110Merge branch Dev with master2020-11-12T16:26:03+01:00Romain ThervilleMerge branch Dev with master- update to the analysis class (issue #129)
- update to the purge process to exclude log files (issue #190)- update to the analysis class (issue #129)
- update to the purge process to exclude log files (issue #190)V3.2.7.5Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/107Merge branch Dev with master2020-06-04T14:42:04+02:00Romain ThervilleMerge branch Dev with masterFix for the issue #129.Fix for the issue #129.V3.2.7.2Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/101Merge branch Dev with Master2020-02-17T15:07:58+01:00Romain ThervilleMerge branch Dev with MasterMerge to create the tag V3.2.7.
More information on the commits and changes in the corresponding tag.Merge to create the tag V3.2.7.
More information on the commits and changes in the corresponding tag.V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/32Merge branch Issue#104 into master2019-08-30T14:59:01+02:00Romain ThervilleMerge branch Issue#104 into masterFixes the infinite loading when the "downloadsymlink" workflow status is returned as "failed" (When the typed passord is incorrect).Fixes the infinite loading when the "downloadsymlink" workflow status is returned as "failed" (When the typed passord is incorrect).V3.2.5https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/71Merge branch issue#119 with master2019-11-28T17:37:57+01:00Romain ThervilleMerge branch issue#119 with masterMinor visual update for the retention display in the single run and single analysis views.
issue #119Minor visual update for the retention display in the single run and single analysis views.
issue #119V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/67Merge branch issue#119.2 with master2019-11-21T15:47:34+01:00Romain ThervilleMerge branch issue#119.2 with master- Display fixed when the analysis or run's data state is 'extended'
- New line in the analysis and run single element display, indicating
the purge date when the element has been purged.
issue#119- Display fixed when the analysis or run's data state is 'extended'
- New line in the analysis and run single element display, indicating
the purge date when the element has been purged.
issue#119V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/64Merge branch issue#120 with master2019-11-12T13:39:32+01:00Romain ThervilleMerge branch issue#120 with masterfile_put_contents() php logs have been removed.
(Refactoring only commit)
issue #120file_put_contents() php logs have been removed.
(Refactoring only commit)
issue #120V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/57Merge branch issue#126 with master2019-10-17T14:40:49+02:00Romain ThervilleMerge branch issue#126 with masterIssue#126
* The superadmin group allows to navigate every project, run and analysis on nG6, hidden or not, with admin rights.
* There is a new table in the admin section ( Administration > Admin management ) that allow superadmins to ad...Issue#126
* The superadmin group allows to navigate every project, run and analysis on nG6, hidden or not, with admin rights.
* There is a new table in the admin section ( Administration > Admin management ) that allow superadmins to add and remove users to and from the superadmin group.
* The group's key is NEVER written directly in the source code, allowing an easier deployment for production use.
* The only requirement outside of the source deployment is to create a group with title = 'ng6_superadmin'. For additional informations, check the SQL file.V3.2.6Romain ThervilleRomain Therville