ng6 merge requestshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests2019-10-10T16:51:42+02:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/50Ng6 slurm 10 x2019-10-10T16:51:42+02:00Claire KuchlyNg6 slurm 10 xAdd illumuna_qc_10X pipelines to ng6Add illumuna_qc_10X pipelines to ng6V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/49Issue#1292019-10-09T15:49:56+02:00Romain ThervilleIssue#129**New project space_id migration workflow**
Allows to migrate a project to another space_id, defined in application.properties .
The corresponding files are moved, and the old directories are deleted.
The projects's runs and analyse...**New project space_id migration workflow**
Allows to migrate a project to another space_id, defined in application.properties .
The corresponding files are moved, and the old directories are deleted.
The projects's runs and analyses's retentions are updated according to the values given in application.properties.
If the retention given is a period (not a date), the new retention is relative to the run or analysis's creation date.
**How to do it?**
python3.4 /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchprojectspaceid --project-id 1292 --space-id seqoccin --admin-login CTDV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/48N g6 ont demultiplex2019-10-10T13:48:38+02:00Maxime MannoN g6 ont demultiplexV3.2.6Maxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/46Merge branch Issue#128 with master2019-09-27T09:15:53+02:00Romain ThervilleMerge branch Issue#128 with masterEmails declared in typo3->email_to_discard will be removed from the purge mail's recipient list.
The emails have to be separated with ',' and no space.Emails declared in typo3->email_to_discard will be removed from the purge mail's recipient list.
The emails have to be separated with ',' and no space.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/45Merge branch Issue#127 with master2019-09-27T09:18:21+02:00Romain ThervilleMerge branch Issue#127 with masterThe send_purge_mail method has been reworked to send the mail to every admin, manager et member link to the project.The send_purge_mail method has been reworked to send the mail to every admin, manager et member link to the project.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/44Merge branch Issue#27 with master2019-09-27T09:14:59+02:00Romain ThervilleMerge branch Issue#27 with masterFixes the analyzes and runs count in the project view, the hidden ones will not be counted.Fixes the analyzes and runs count in the project view, the hidden ones will not be counted.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/39Merge branch Issue#31 with master2019-09-13T11:42:30+02:00Romain ThervilleMerge branch Issue#31 with masterThe purge demand mail has been enhanced with clear names and links for runs an analyzes.The purge demand mail has been enhanced with clear names and links for runs an analyzes.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/146Merge branch issue#240.2 with master2022-12-20T14:35:55+01:00Romain ThervilleMerge branch issue#240.2 with masterUpdate to the purge process
- Do not send purge alert mails if the demand only contains hidden
elements. (Issue #240)
- The hidden elements should appear in the admin area, in the DB demand,
should be purged, but not appear in any emai...Update to the purge process
- Do not send purge alert mails if the demand only contains hidden
elements. (Issue #240)
- The hidden elements should appear in the admin area, in the DB demand,
should be purged, but not appear in any email. (Issue #240)
Issue #240
This commit already includes the changes from the following commit :
bd50bd327d93aa4ffd66cd14cea4b673d41e0f3eV3.4.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/140Merge branch issue#228.2 with master2022-06-09T09:50:46+02:00Romain ThervilleMerge branch issue#228.2 with masterUpdate to ng6.php
- unhiding a run/analysis now only impacts the elements downward, an not
upward anymore.
Issue #228Update to ng6.php
- unhiding a run/analysis now only impacts the elements downward, an not
upward anymore.
Issue #228V3.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/118Merge branch Dev with Master2021-03-25T10:51:01+01:00Romain ThervilleMerge branch Dev with MasterMassive update to the purge process
- The multiple "esitoul" email adresses in the purge mail's "cc" field have been fixed. Issue #195
- The hidden runs and analyzes will not appear anymore in the purge mail (and resent purge mail), no...Massive update to the purge process
- The multiple "esitoul" email adresses in the purge mail's "cc" field have been fixed. Issue #195
- The hidden runs and analyzes will not appear anymore in the purge mail (and resent purge mail), nor in the volume counts for each purge demand, but are still recorded in our database. Issues #193, #178
- If a purge demand is already declared for a project (and still pending), and an admin tries to open a new one, a SQL trigger is called to prevent the insertion. This results in a mail sent to the nG6 admins, informing them that no new demand can be openned (for this project) as long as the old one has not been treated. Issue #192V3.2.8Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/107Merge branch Dev with master2020-06-04T14:42:04+02:00Romain ThervilleMerge branch Dev with masterFix for the issue #129.Fix for the issue #129.V3.2.7.2Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/106Merge branch issue#129 with dev2020-06-04T10:20:45+02:00Romain ThervilleMerge branch issue#129 with devThe switchspaceid workflow has been made to update the paths to the migrated analysis files (broken links and missing files).
Issue#129The switchspaceid workflow has been made to update the paths to the migrated analysis files (broken links and missing files).
Issue#129Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/101Merge branch Dev with Master2020-02-17T15:07:58+01:00Romain ThervilleMerge branch Dev with MasterMerge to create the tag V3.2.7.
More information on the commits and changes in the corresponding tag.Merge to create the tag V3.2.7.
More information on the commits and changes in the corresponding tag.V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/155Display projects with new runs added, first2024-03-11T10:52:29+01:00Gerald Salingerald.salin@inra.frDisplay projects with new runs added, firstV3.4.6Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/154add optional run parameter for NGL-Bi run code storage2024-03-05T17:02:37+01:00Gerald Salingerald.salin@inra.fradd optional run parameter for NGL-Bi run code storage#245#245V3.4.5Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/150copy bash script on remote server to be able to execute it for symbolic links2023-11-14T05:05:08+01:00Gerald Salingerald.salin@inra.frcopy bash script on remote server to be able to execute it for symbolic links#246#246V3.4.4Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/149update version2023-10-04T10:47:42+02:00Gerald Salingerald.salin@inra.frupdate versionV3.4.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/137Add HTML repport for ONT run2022-05-11T10:34:27+02:00Jules SabbanAdd HTML repport for ONT runV3.3Jules SabbanJules Sabbanhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/136Update to the purge process to ignore hidden elements2022-04-26T13:46:43+02:00Romain ThervilleUpdate to the purge process to ignore hidden elementsUpdate to the purge process
- The hidden runs and analyzes are now excluded from the purge demands
and the mail. They will from now on be purged semi-manually.
Issue #225Update to the purge process
- The hidden runs and analyzes are now excluded from the purge demands
and the mail. They will from now on be purged semi-manually.
Issue #225V3.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/135Removing the size display from the project and run pages2022-04-26T13:46:36+02:00Romain ThervilleRemoving the size display from the project and run pagesUpdate to the project and run pages
- This size computing and displaying has been removed from those pages.
Issue #224Update to the project and run pages
- This size computing and displaying has been removed from those pages.
Issue #224V3.3