ng6 merge requestshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests2020-02-17T15:07:58+01:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/101Merge branch Dev with Master2020-02-17T15:07:58+01:00Romain ThervilleMerge branch Dev with MasterMerge to create the tag V3.2.7.
More information on the commits and changes in the corresponding tag.Merge to create the tag V3.2.7.
More information on the commits and changes in the corresponding tag.V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/98Merge branch issue#161 with dev2020-02-14T17:45:31+01:00Romain ThervilleMerge branch issue#161 with devUpdate to the single project view
- The "New data added to this project will be kept [...]" label has been
removed.
- The label indicating a space's retention limit and purge policy will
now be set in application.properties, as 'purge_m...Update to the single project view
- The "New data added to this project will be kept [...]" label has been
removed.
- The label indicating a space's retention limit and purge policy will
now be set in application.properties, as 'purge_msg' in the project
variables.
- Every project's purge message will be displayed in its individual view
(Under the "Current space: xxx" label).
Issue#161V3.2.7Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/97Merge branch issue#161.2 with dev2020-02-11T17:39:03+01:00Romain ThervilleMerge branch issue#161.2 with devUpdate to "Administration > Mail obsolete project"
New "Send mail without extension" button, that sends the purge demand
mail without the content related to retention extension.
issue#161Update to "Administration > Mail obsolete project"
New "Send mail without extension" button, that sends the purge demand
mail without the content related to retention extension.
issue#161V3.2.7Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/96Merge branch issue#161 with dev2020-02-06T15:44:00+01:00Romain ThervilleMerge branch issue#161 with dev1 log line removed from tx_nG6_db.php
The log instruction might only work in the test environment.
I forgot to remove this line in the last commit, my bad.
issue#1611 log line removed from tx_nG6_db.php
The log instruction might only work in the test environment.
I forgot to remove this line in the last commit, my bad.
issue#161V3.2.7Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/95Merge branch Issue#161with dev2020-02-06T14:41:36+01:00Romain ThervilleMerge branch Issue#161with devUpdate to "Admin > process mail demands".
2 new filters : "project space" and "delay exceeded"
1 new "refresh list" buttonUpdate to "Admin > process mail demands".
2 new filters : "project space" and "delay exceeded"
1 new "refresh list" buttonV3.2.7Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/93Merge branch issue#146 with dev2020-01-31T12:02:30+01:00Romain ThervilleMerge branch issue#146 with devUpdate to the admin scripts
This update was made to recover the redirection page id dynamically from
the typo3 template values.
Issue #146Update to the admin scripts
This update was made to recover the redirection page id dynamically from
the typo3 template values.
Issue #146V3.2.7Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/84Merge branch Issue#151 with master2020-01-14T17:15:41+01:00Romain ThervilleMerge branch Issue#151 with masterExact same Merge as !81. I made a mistake when deleting the old one, now the branch is back.
Same commit as d6928bee343303b26bb04673cff0c90088daf05b .
Issue #151Exact same Merge as !81. I made a mistake when deleting the old one, now the branch is back.
Same commit as d6928bee343303b26bb04673cff0c90088daf05b .
Issue #151V3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/83Merge branch Issue#129 with master2020-01-14T17:15:24+01:00Romain ThervilleMerge branch Issue#129 with master* The switch_space_id workflow can be launched by the current project's admins in the single project view.
* Before running the workflow, we ask a user+pwd to run a test. More infos in this commit: b987a46a5330737ba0cbb8fd9b5bb0605ca01adf* The switch_space_id workflow can be launched by the current project's admins in the single project view.
* Before running the workflow, we ask a user+pwd to run a test. More infos in this commit: b987a46a5330737ba0cbb8fd9b5bb0605ca01adfV3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/80Merge branch issue#129.2 with master2020-01-08T17:53:39+01:00Romain ThervilleMerge branch issue#129.2 with masterBig update for the switch_space_id workflow
-The workflow now handles empty (no data) runs and analyzes, and more
errors.
-A lot of user cases have been tested.
issue #129Big update for the switch_space_id workflow
-The workflow now handles empty (no data) runs and analyzes, and more
errors.
-A lot of user cases have been tested.
issue #129V3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/77#156 correct style2020-01-09T09:05:43+01:00Celine Noirot#156 correct styleCorrect mains style problemsCorrect mains style problemsV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/71Merge branch issue#119 with master2019-11-28T17:37:57+01:00Romain ThervilleMerge branch issue#119 with masterMinor visual update for the retention display in the single run and single analysis views.
issue #119Minor visual update for the retention display in the single run and single analysis views.
issue #119V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/69Merge branch issue#129 with master2019-11-29T14:02:56+01:00Romain ThervilleMerge branch issue#129 with masterHuge update for the new migration workflow:
- New name : switch_space_id.
- The given space id is checked in application.properties.
- Most of the treatments have been moved to a "components" folder,
allowing us to create easily a new "...Huge update for the new migration workflow:
- New name : switch_space_id.
- The given space id is checked in application.properties.
- Most of the treatments have been moved to a "components" folder,
allowing us to create easily a new "migrate_several_projects" (or
"bulk_project_migration") later.
- The workflow can be launched from the single project view on the nG6
website, when logged a superadmin user.
- The project's space_id is visible to everyone on the single project
view.
- A warning indicating that the migration updates the retention has been
added to the workflow's form in single project view.
- More logs in ng6.log, and the new log file MoveProject.stdout. (path
exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout)
- CSS updates for the project views.
- For new space_ids, the <space_id>/run and <space_id>/analyze
directories will be created if missing.
Issue #129
Commit db1b75b8db3b4e2379c570c9de77061a40d8cc6eV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/67Merge branch issue#119.2 with master2019-11-21T15:47:34+01:00Romain ThervilleMerge branch issue#119.2 with master- Display fixed when the analysis or run's data state is 'extended'
- New line in the analysis and run single element display, indicating
the purge date when the element has been purged.
issue#119- Display fixed when the analysis or run's data state is 'extended'
- New line in the analysis and run single element display, indicating
the purge date when the element has been purged.
issue#119V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/66Merge branch Issue#129 with master2019-11-19T09:32:54+01:00Romain ThervilleMerge branch Issue#129 with masterV3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/64Merge branch issue#120 with master2019-11-12T13:39:32+01:00Romain ThervilleMerge branch issue#120 with masterfile_put_contents() php logs have been removed.
(Refactoring only commit)
issue #120file_put_contents() php logs have been removed.
(Refactoring only commit)
issue #120V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/61merge branche issue#119 with master2019-10-24T09:50:03+02:00Romain Thervillemerge branche issue#119 with masterUpdate the run and analysis display to add the data state, and retention limit.
commit 20f6a237798424ef1b82cb236ff21fbbaaba03be
issue #119Update the run and analysis display to add the data state, and retention limit.
commit 20f6a237798424ef1b82cb236ff21fbbaaba03be
issue #119V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/59Merge branch issue#126.2 with master2019-10-28T10:29:29+01:00Romain ThervilleMerge branch issue#126.2 with masterSuperadmin users are now allowed to update any user (and their
password), from any project.
issue #126Superadmin users are now allowed to update any user (and their
password), from any project.
issue #126V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/57Merge branch issue#126 with master2019-10-17T14:40:49+02:00Romain ThervilleMerge branch issue#126 with masterIssue#126
* The superadmin group allows to navigate every project, run and analysis on nG6, hidden or not, with admin rights.
* There is a new table in the admin section ( Administration > Admin management ) that allow superadmins to ad...Issue#126
* The superadmin group allows to navigate every project, run and analysis on nG6, hidden or not, with admin rights.
* There is a new table in the admin section ( Administration > Admin management ) that allow superadmins to add and remove users to and from the superadmin group.
* The group's key is NEVER written directly in the source code, allowing an easier deployment for production use.
* The only requirement outside of the source deployment is to create a group with title = 'ng6_superadmin'. For additional informations, check the SQL file.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/56Merge branch issue#129 with master2019-10-17T10:39:18+02:00Romain ThervilleMerge branch issue#129 with masterEnhancement for the workflow 'switch_project_space_id'
I have moved the DB updates down in the code, to only register
migrations that went well.
issue #129Enhancement for the workflow 'switch_project_space_id'
I have moved the DB updates down in the code, to only register
migrations that went well.
issue #129V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/54merge branch issue#129 with master2019-10-17T09:54:56+02:00Romain Thervillemerge branch issue#129 with masterThe workflow has been re-writed to put most of the BD treatments in the
corresponding classes (Run, Analysis, Project).
issue#129The workflow has been re-writed to put most of the BD treatments in the
corresponding classes (Run, Analysis, Project).
issue#129V3.2.6Romain ThervilleRomain Therville