ng6 merge requestshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests2024-03-11T10:52:29+01:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/155Display projects with new runs added, first2024-03-11T10:52:29+01:00Gerald Salingerald.salin@inra.frDisplay projects with new runs added, firstV3.4.6Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/154add optional run parameter for NGL-Bi run code storage2024-03-05T17:02:37+01:00Gerald Salingerald.salin@inra.fradd optional run parameter for NGL-Bi run code storage#245#245V3.4.5Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/150copy bash script on remote server to be able to execute it for symbolic links2023-11-14T05:05:08+01:00Gerald Salingerald.salin@inra.frcopy bash script on remote server to be able to execute it for symbolic links#246#246V3.4.4Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/149update version2023-10-04T10:47:42+02:00Gerald Salingerald.salin@inra.frupdate versionV3.4.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/146Merge branch issue#240.2 with master2022-12-20T14:35:55+01:00Romain ThervilleMerge branch issue#240.2 with masterUpdate to the purge process
- Do not send purge alert mails if the demand only contains hidden
elements. (Issue #240)
- The hidden elements should appear in the admin area, in the DB demand,
should be purged, but not appear in any emai...Update to the purge process
- Do not send purge alert mails if the demand only contains hidden
elements. (Issue #240)
- The hidden elements should appear in the admin area, in the DB demand,
should be purged, but not appear in any email. (Issue #240)
Issue #240
This commit already includes the changes from the following commit :
bd50bd327d93aa4ffd66cd14cea4b673d41e0f3eV3.4.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/140Merge branch issue#228.2 with master2022-06-09T09:50:46+02:00Romain ThervilleMerge branch issue#228.2 with masterUpdate to ng6.php
- unhiding a run/analysis now only impacts the elements downward, an not
upward anymore.
Issue #228Update to ng6.php
- unhiding a run/analysis now only impacts the elements downward, an not
upward anymore.
Issue #228V3.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/137Add HTML repport for ONT run2022-05-11T10:34:27+02:00Jules SabbanAdd HTML repport for ONT runV3.3Jules SabbanJules Sabbanhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/136Update to the purge process to ignore hidden elements2022-04-26T13:46:43+02:00Romain ThervilleUpdate to the purge process to ignore hidden elementsUpdate to the purge process
- The hidden runs and analyzes are now excluded from the purge demands
and the mail. They will from now on be purged semi-manually.
Issue #225Update to the purge process
- The hidden runs and analyzes are now excluded from the purge demands
and the mail. They will from now on be purged semi-manually.
Issue #225V3.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/135Removing the size display from the project and run pages2022-04-26T13:46:36+02:00Romain ThervilleRemoving the size display from the project and run pagesUpdate to the project and run pages
- This size computing and displaying has been removed from those pages.
Issue #224Update to the project and run pages
- This size computing and displaying has been removed from those pages.
Issue #224V3.3https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/134Modification of BWA algo #2212022-02-14T09:43:27+01:00Jules SabbanModification of BWA algo #221Change BWA algo `aln` to `mem`.Change BWA algo `aln` to `mem`.Jules SabbanJules Sabbanhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/130update require and use for tx_nG6_db and utils2021-10-12T04:27:11+02:00Gerald Salingerald.salin@inra.frupdate require and use for tx_nG6_db and utilsV3.3Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/129Typo3v102021-10-11T18:44:27+02:00Gerald Salingerald.salin@inra.frTypo3v10V3.3Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/122Typo3 v92021-04-28T00:37:47+02:00Gerald Salingerald.salin@inra.frTypo3 v9Compatibility with typo3 V9
add envelop sender adress to get error on email sendingCompatibility with typo3 V9
add envelop sender adress to get error on email sendingV3.2.8Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/121conformity to typo3 V9.52021-04-23T11:47:56+02:00Gerald Salingerald.salin@inra.frconformity to typo3 V9.5V3.2.8.1Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/118Merge branch Dev with Master2021-03-25T10:51:01+01:00Romain ThervilleMerge branch Dev with MasterMassive update to the purge process
- The multiple "esitoul" email adresses in the purge mail's "cc" field have been fixed. Issue #195
- The hidden runs and analyzes will not appear anymore in the purge mail (and resent purge mail), no...Massive update to the purge process
- The multiple "esitoul" email adresses in the purge mail's "cc" field have been fixed. Issue #195
- The hidden runs and analyzes will not appear anymore in the purge mail (and resent purge mail), nor in the volume counts for each purge demand, but are still recorded in our database. Issues #193, #178
- If a purge demand is already declared for a project (and still pending), and an admin tries to open a new one, a SQL trigger is called to prevent the insertion. This results in a mail sent to the nG6 admins, informing them that no new demand can be openned (for this project) as long as the old one has not been treated. Issue #192V3.2.8Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/114Merge branch Issue#189 with master2021-02-24T13:33:51+01:00Romain ThervilleMerge branch Issue#189 with masterResolves the issue #189.Resolves the issue #189.V3.2.8Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/110Merge branch Dev with master2020-11-12T16:26:03+01:00Romain ThervilleMerge branch Dev with master- update to the analysis class (issue #129)
- update to the purge process to exclude log files (issue #190)- update to the analysis class (issue #129)
- update to the purge process to exclude log files (issue #190)V3.2.7.5Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/109Merge branch Issue#190 with master2020-11-12T16:13:25+01:00Romain ThervilleMerge branch Issue#190 with masterUpdate to the purge process.
See the issue #190 for more infos.Update to the purge process.
See the issue #190 for more infos.V3.2.7.5Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/107Merge branch Dev with master2020-06-04T14:42:04+02:00Romain ThervilleMerge branch Dev with masterFix for the issue #129.Fix for the issue #129.V3.2.7.2Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/106Merge branch issue#129 with dev2020-06-04T10:20:45+02:00Romain ThervilleMerge branch issue#129 with devThe switchspaceid workflow has been made to update the paths to the migrated analysis files (broken links and missing files).
Issue#129The switchspaceid workflow has been made to update the paths to the migrated analysis files (broken links and missing files).
Issue#129Celine NoirotCeline Noirot