ng6 merge requestshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests2019-08-30T14:59:01+02:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/32Merge branch Issue#104 into master2019-08-30T14:59:01+02:00Romain ThervilleMerge branch Issue#104 into masterFixes the infinite loading when the "downloadsymlink" workflow status is returned as "failed" (When the typed passord is incorrect).Fixes the infinite loading when the "downloadsymlink" workflow status is returned as "failed" (When the typed passord is incorrect).V3.2.5https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/34Issue#1162019-08-30T15:45:23+02:00Romain ThervilleIssue#116New custom message indicating expiration dates (runs and analysis)New custom message indicating expiration dates (runs and analysis)V3.2.5https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/33Modification for duplicate search and visualisation ok2019-08-30T14:58:57+02:00Claire KuchlyModification for duplicate search and visualisation okV3.2.5Claire KuchlyClaire Kuchlyhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/80Merge branch issue#129.2 with master2020-01-08T17:53:39+01:00Romain ThervilleMerge branch issue#129.2 with masterBig update for the switch_space_id workflow
-The workflow now handles empty (no data) runs and analyzes, and more
errors.
-A lot of user cases have been tested.
issue #129Big update for the switch_space_id workflow
-The workflow now handles empty (no data) runs and analyzes, and more
errors.
-A lot of user cases have been tested.
issue #129V3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/66Merge branch Issue#129 with master2019-11-19T09:32:54+01:00Romain ThervilleMerge branch Issue#129 with masterV3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/84Merge branch Issue#151 with master2020-01-14T17:15:41+01:00Romain ThervilleMerge branch Issue#151 with masterExact same Merge as !81. I made a mistake when deleting the old one, now the branch is back.
Same commit as d6928bee343303b26bb04673cff0c90088daf05b .
Issue #151Exact same Merge as !81. I made a mistake when deleting the old one, now the branch is back.
Same commit as d6928bee343303b26bb04673cff0c90088daf05b .
Issue #151V3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/83Merge branch Issue#129 with master2020-01-14T17:15:24+01:00Romain ThervilleMerge branch Issue#129 with master* The switch_space_id workflow can be launched by the current project's admins in the single project view.
* Before running the workflow, we ask a user+pwd to run a test. More infos in this commit: b987a46a5330737ba0cbb8fd9b5bb0605ca01adf* The switch_space_id workflow can be launched by the current project's admins in the single project view.
* Before running the workflow, we ask a user+pwd to run a test. More infos in this commit: b987a46a5330737ba0cbb8fd9b5bb0605ca01adfV3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/82Merge branch Issue#129 with master2020-01-14T13:31:10+01:00Romain ThervilleMerge branch Issue#129 with masterIn the single project view page:
The "switch_space_id" migration workflow is now available to the projects's administrators.In the single project view page:
The "switch_space_id" migration workflow is now available to the projects's administrators.V3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/81Merge branch Issue#151 with master2020-01-14T16:27:37+01:00Romain ThervilleMerge branch Issue#151 with master Update for the page Administration > Mail obsolete project
- The "size" filter criteria has been replaced by a "space" filter.
- The default value is "no filter".
- The result table has one more column, "Project space".
- The search al... Update for the page Administration > Mail obsolete project
- The "size" filter criteria has been replaced by a "space" filter.
- The default value is "no filter".
- The result table has one more column, "Project space".
- The search algorithm has been updated.
WARNING : Check the issue #151 to find the SQL commands to update the
views's structures. Do not forget when pushing the next verion of nG6!V3.2.6https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/77#156 correct style2020-01-09T09:05:43+01:00Celine Noirot#156 correct styleCorrect mains style problemsCorrect mains style problemsV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/71Merge branch issue#119 with master2019-11-28T17:37:57+01:00Romain ThervilleMerge branch issue#119 with masterMinor visual update for the retention display in the single run and single analysis views.
issue #119Minor visual update for the retention display in the single run and single analysis views.
issue #119V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/70Merge branch Issue#119 with master2019-11-28T17:23:00+01:00Romain ThervilleMerge branch Issue#119 with masterMinor visual fixes. More infos in this commit: 5928040b25307b2c61450eb14a4247f4510ad207Minor visual fixes. More infos in this commit: 5928040b25307b2c61450eb14a4247f4510ad207V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/69Merge branch issue#129 with master2019-11-29T14:02:56+01:00Romain ThervilleMerge branch issue#129 with masterHuge update for the new migration workflow:
- New name : switch_space_id.
- The given space id is checked in application.properties.
- Most of the treatments have been moved to a "components" folder,
allowing us to create easily a new "...Huge update for the new migration workflow:
- New name : switch_space_id.
- The given space id is checked in application.properties.
- Most of the treatments have been moved to a "components" folder,
allowing us to create easily a new "migrate_several_projects" (or
"bulk_project_migration") later.
- The workflow can be launched from the single project view on the nG6
website, when logged a superadmin user.
- The project's space_id is visible to everyone on the single project
view.
- A warning indicating that the migration updates the retention has been
added to the workflow's form in single project view.
- More logs in ng6.log, and the new log file MoveProject.stdout. (path
exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout)
- CSS updates for the project views.
- For new space_ids, the <space_id>/run and <space_id>/analyze
directories will be created if missing.
Issue #129
Commit db1b75b8db3b4e2379c570c9de77061a40d8cc6eV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/64Merge branch issue#120 with master2019-11-12T13:39:32+01:00Romain ThervilleMerge branch issue#120 with masterfile_put_contents() php logs have been removed.
(Refactoring only commit)
issue #120file_put_contents() php logs have been removed.
(Refactoring only commit)
issue #120V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/61merge branche issue#119 with master2019-10-24T09:50:03+02:00Romain Thervillemerge branche issue#119 with masterUpdate the run and analysis display to add the data state, and retention limit.
commit 20f6a237798424ef1b82cb236ff21fbbaaba03be
issue #119Update the run and analysis display to add the data state, and retention limit.
commit 20f6a237798424ef1b82cb236ff21fbbaaba03be
issue #119V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/59Merge branch issue#126.2 with master2019-10-28T10:29:29+01:00Romain ThervilleMerge branch issue#126.2 with masterSuperadmin users are now allowed to update any user (and their
password), from any project.
issue #126Superadmin users are now allowed to update any user (and their
password), from any project.
issue #126V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/57Merge branch issue#126 with master2019-10-17T14:40:49+02:00Romain ThervilleMerge branch issue#126 with masterIssue#126
* The superadmin group allows to navigate every project, run and analysis on nG6, hidden or not, with admin rights.
* There is a new table in the admin section ( Administration > Admin management ) that allow superadmins to ad...Issue#126
* The superadmin group allows to navigate every project, run and analysis on nG6, hidden or not, with admin rights.
* There is a new table in the admin section ( Administration > Admin management ) that allow superadmins to add and remove users to and from the superadmin group.
* The group's key is NEVER written directly in the source code, allowing an easier deployment for production use.
* The only requirement outside of the source deployment is to create a group with title = 'ng6_superadmin'. For additional informations, check the SQL file.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/56Merge branch issue#129 with master2019-10-17T10:39:18+02:00Romain ThervilleMerge branch issue#129 with masterEnhancement for the workflow 'switch_project_space_id'
I have moved the DB updates down in the code, to only register
migrations that went well.
issue #129Enhancement for the workflow 'switch_project_space_id'
I have moved the DB updates down in the code, to only register
migrations that went well.
issue #129V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/54merge branch issue#129 with master2019-10-17T09:54:56+02:00Romain Thervillemerge branch issue#129 with masterThe workflow has been re-writed to put most of the BD treatments in the
corresponding classes (Run, Analysis, Project).
issue#129The workflow has been re-writed to put most of the BD treatments in the
corresponding classes (Run, Analysis, Project).
issue#129V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/51Issue#1202019-10-10T15:51:37+02:00Romain ThervilleIssue#120Adds a new retention policy line in the single project view display.
For more informations, check https://forgemia.inra.fr/genotoul-bioinfo/ng6/issues/120 .Adds a new retention policy line in the single project view display.
For more informations, check https://forgemia.inra.fr/genotoul-bioinfo/ng6/issues/120 .V3.2.6Romain ThervilleRomain Therville