ng6 merge requestshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests2018-01-25T14:27:41+01:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/1Update run_stats.py : missing one line2018-01-25T14:27:41+01:00Maxime MannoUpdate run_stats.py : missing one linehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/3Test mmanno2018-08-01T09:17:36+02:00Maxime MannoTest mmannoAdd fast5archive component and change shell function by shell executionAdd fast5archive component and change shell function by shell executionV3.3 - ONT_QC analysisMaxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/17Ng6 ont qc improvement2019-01-03T17:16:16+01:00Maxime MannoNg6 ont qc improvementV3.2.2Maxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/18Count reads and bases too early2019-01-04T10:50:13+01:00Gerald Salingerald.salin@inra.frCount reads and bases too earlyV3.2.2Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/19Update get-version : #902019-01-08T15:35:24+01:00Maxime MannoUpdate get-version : #90popen a shell command with module load before the porechop commandpopen a shell command with module load before the porechop commandV3.2.3Maxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/20Change path to scripts R2019-01-30T16:38:00+01:00Maxime MannoChange path to scripts RV3.2.3Maxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/32Merge branch Issue#104 into master2019-08-30T14:59:01+02:00Romain ThervilleMerge branch Issue#104 into masterFixes the infinite loading when the "downloadsymlink" workflow status is returned as "failed" (When the typed passord is incorrect).Fixes the infinite loading when the "downloadsymlink" workflow status is returned as "failed" (When the typed passord is incorrect).V3.2.5https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/31Merge branch Issue#86 into master2019-08-30T14:58:23+02:00Romain ThervilleMerge branch Issue#86 into masterRemoves special characters from run names in the downloadsymlink process.Removes special characters from run names in the downloadsymlink process.V3.2.5Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/36Merge branch Issue#124 with master2019-09-06T11:35:02+02:00Romain ThervilleMerge branch Issue#124 with master2 fixes:
in ng6workflows.py, there was a bug with space_ids when adding an analyse to a run.
in analysis.py, the space_id wasn't recovered properly.2 fixes:
in ng6workflows.py, there was a bug with space_ids when adding an analyse to a run.
in analysis.py, the space_id wasn't recovered properly.V3.2.5Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/38merge branch Issue#8 into master2019-09-13T11:42:51+02:00Romain Thervillemerge branch Issue#8 into masterThe charachter '&' used to "cut" the input password for new users. It has been fixed with an ASCII normalization.The charachter '&' used to "cut" the input password for new users. It has been fixed with an ASCII normalization.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/47merge reopened branch 86 with master2019-09-27T09:15:38+02:00Romain Thervillemerge reopened branch 86 with master'0' was not allowed in Run name during download workflow.
(They were replaced with '_'.)
issue#86 reopened'0' was not allowed in Run name during download workflow.
(They were replaced with '_'.)
issue#86 reopenedV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/52Issue#1292019-10-14T13:22:08+02:00Romain ThervilleIssue#129There was a bug concerning the moved files's directories. It has been fixed, and some logging calls have been removed.There was a bug concerning the moved files's directories. It has been fixed, and some logging calls have been removed.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/53Merge branch issue#120 with master2019-10-17T09:54:48+02:00Romain ThervilleMerge branch issue#120 with masterThe displayed date (when the retention is a fixed date) in project view was wrong.
Issue #120The displayed date (when the retention is a fixed date) in project view was wrong.
Issue #120V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/55merge branch issue#95 with master2019-10-17T09:57:00+02:00Romain Thervillemerge branch issue#95 with masterFix for jflow.min.js
Resolves the addanalysis bug
issue#95, issue#85Fix for jflow.min.js
Resolves the addanalysis bug
issue#95, issue#85V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/60Merge branch issue#121 with master2019-10-24T09:39:03+02:00Romain ThervilleMerge branch issue#121 with masterThe purge mails 'Errors-To:' field has been set to the 'email_from'
value, instead of 'email_copy'.
Issue#121The purge mails 'Errors-To:' field has been set to the 'email_from'
value, instead of 'email_copy'.
Issue#121V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/62[demultiplexont.py]2019-10-28T13:22:00+01:00Audrey Gibert[demultiplexont.py]Script was incorrect for long time processing seqkit
-> Now : postprocess waits the end of job in the process partScript was incorrect for long time processing seqkit
-> Now : postprocess waits the end of job in the process partV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/63#139 debug2019-11-13T15:25:44+01:00Claire Kuchly#139 debugDebug number of reads add to saved files for illumina ng6 workflow.Debug number of reads add to saved files for illumina ng6 workflow.Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/65#141 change REGEX to display pictures from FASTQC analysis from new2019-11-13T15:26:01+01:00Claire Kuchly#141 change REGEX to display pictures from FASTQC analysis from newstorage spacesstorage spacesV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/66Merge branch Issue#129 with master2019-11-19T09:32:54+01:00Romain ThervilleMerge branch Issue#129 with masterV3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/merge_requests/72Merge issue#129 with master2019-12-09T13:23:18+01:00Romain ThervilleMerge issue#129 with master- I have removed the "local = True" parameter to execute the workflow on
the computing cluster instead of ng6's host.
(It was a test parameter, only meant for testing.)
issue #129- I have removed the "local = True" parameter to execute the workflow on
the computing cluster instead of ng6's host.
(It was a test parameter, only meant for testing.)
issue #129V3.2.6Romain ThervilleRomain Therville