ng6 issueshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues2018-06-27T18:32:33+02:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/1Mail de relance2018-06-27T18:32:33+02:00Celine NoirotMail de relanceProposer un mail de relance, une fois que la purge déjà été demandéeProposer un mail de relance, une fois que la purge déjà été demandéeV3.1 - Purge2018-04-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/2Purge : somme par projet incoherente2018-06-19T15:08:13+02:00Celine NoirotPurge : somme par projet incoherenteLa somme des données "purgeables" n'est pas coherente dans le table de puge.La somme des données "purgeables" n'est pas coherente dans le table de puge.V3.1 - PurgeClaire KuchlyClaire Kuchly2018-04-18https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/3Infos générales sur la page purge2018-06-19T15:14:21+02:00Celine NoirotInfos générales sur la page purgeDonner l'information de :
- la somme totale "purgeable"
- le nombre total de projets
correspondant aux projets filtrés.Donner l'information de :
- la somme totale "purgeable"
- le nombre total de projets
correspondant aux projets filtrés.V3.1 - PurgeClaire KuchlyClaire Kuchly2018-04-18https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/4ONT_QC analysis : Fast5archive component bug with multiple runs2018-03-30T10:38:47+02:00Maxime MannoONT_QC analysis : Fast5archive component bug with multiple runsIf a run has been launch many times, it has multiple subdirectory of raw data that we have to tar with différents namesIf a run has been launch many times, it has multiple subdirectory of raw data that we have to tar with différents namesV3.3 - ONT_QC analysisMaxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/5Bug ng6_cli status --all and on the interface2018-08-28T14:15:51+02:00Maxime MannoBug ng6_cli status --all and on the interfaceAfter the upgrade of nG6_Git, the command ng6_cli status --all did not workAfter the upgrade of nG6_Git, the command ng6_cli status --all did not workV3.2 - SlurmClaire KuchlyClaire Kuchlyhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/6Update of the picardtools2018-08-02T13:07:23+02:00Audrey GibertUpdate of the picardtoolsWe have picardtools 1.88
we want to test v2.14 on SLURMWe have picardtools 1.88
we want to test v2.14 on SLURMV3.2 - SlurmAudrey GibertAudrey Gibert2018-04-27https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/7Update of Samtools2018-08-01T09:19:30+02:00Maxime MannoUpdate of SamtoolsOn Genotoul we use samtools v1.1
We want to use the v1.3.1 on genologin (for the momentOn Genotoul we use samtools v1.1
We want to use the v1.3.1 on genologin (for the momentV3.2 - SlurmMaxime MannoMaxime Manno2018-04-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/8Metacharacter "&" in password creates a bug2019-09-12T09:27:13+02:00Audrey GibertMetacharacter "&" in password creates a bugWhen "&" is in the password, the registered password stops just before the "&" :
Example:
if "hgff&ld" is written,
the registered password in the database is "hgff"When "&" is in the password, the registered password stops just before the "&" :
Example:
if "hgff&ld" is written,
the registered password in the database is "hgff"V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/9Regenerate a password for users added by the project manager2020-01-22T16:22:03+01:00Audrey GibertRegenerate a password for users added by the project managerFor now, there is no possibility for a user added by the project manager to regenerate their password.
=> It has to be addedFor now, there is no possibility for a user added by the project manager to regenerate their password.
=> It has to be addedRomain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/11Correct list of id analyse and run stored in db for a purge demand2018-08-02T14:55:49+02:00Celine NoirotCorrect list of id analyse and run stored in db for a purge demandWhen purge was created, a bug stored all values of a project
Correct the list of analyse id and run id before launching the purge
Think to also remove the purge id field to the analyses and the runsWhen purge was created, a bug stored all values of a project
Correct the list of analyse id and run id before launching the purge
Think to also remove the purge id field to the analyses and the runsV3.1 - PurgeCeline NoirotCeline Noirot2018-06-29https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/12Add visualisation and compute of stored/purged size per group/lab2018-07-18T15:48:10+02:00Celine NoirotAdd visualisation and compute of stored/purged size per group/labAdd visualisation of stored/purged size per group/lab
Generate a table and a graphics.Add visualisation of stored/purged size per group/lab
Generate a table and a graphics.V3.1 - PurgeCeline NoirotCeline Noirot2018-06-29https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/13flag project which all runs and analyses are purgeable2018-07-18T15:48:10+02:00Claire Kuchlyflag project which all runs and analyses are purgeableV3.1 - PurgeClaire KuchlyClaire Kuchly2018-06-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/14[purge] : for projet who has no administror : mail sent to all users project2018-08-28T14:39:30+02:00Claire Kuchly[purge] : for projet who has no administror : mail sent to all users projectV3.1 - PurgeCeline NoirotCeline Noirot2018-06-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/15purge: add extension by lab2018-06-21T17:27:34+02:00Celine Noirotpurge: add extension by labAdd the posibility to extend by lab.Add the posibility to extend by lab.V3.1 - PurgeCeline NoirotCeline Noirot2018-06-29https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/16generate script to compute storage size for extention2019-07-23T14:15:59+02:00Celine Noirotgenerate script to compute storage size for extentionV3.1 - Purge2018-06-29https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/17Add project extention2018-07-18T15:48:10+02:00Celine NoirotAdd project extentionIf a project has a obsolete run (not all), all its run or analysis can be extentedIf a project has a obsolete run (not all), all its run or analysis can be extentedV3.1 - PurgeCeline NoirotCeline Noirot2018-06-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/18List all project even not obsolete2018-06-28T18:11:30+02:00Celine NoirotList all project even not obsoleteList all project in purge management to enable the extention for the projects of a complete lab.List all project in purge management to enable the extention for the projects of a complete lab.V3.1 - PurgeCeline NoirotCeline Noirot2018-06-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/19Bug project view nb run / analyse / size2018-06-20T16:49:27+02:00Celine NoirotBug project view nb run / analyse / size![ng6-project-bug](/uploads/a9a4a23eb23a55520cae49a853623d8e/ng6-project-bug.png)![ng6-project-bug](/uploads/a9a4a23eb23a55520cae49a853623d8e/ng6-project-bug.png)V3.1 - Purge2018-06-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/20Bug purge managment view : total purgeable size false2018-06-21T13:25:30+02:00Celine NoirotBug purge managment view : total purgeable size false![prod-ng6](/uploads/a65c6c3e0444eda15926e004995a55b6/prod-ng6.png)![prod-ng6](/uploads/a65c6c3e0444eda15926e004995a55b6/prod-ng6.png)V3.1 - Purgehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/21Delete Analyse or run from project view or run view2018-08-14T14:13:03+02:00Celine NoirotDelete Analyse or run from project view or run viewIf the user enter an existing user on unix server, and this user do not have permission, the return is true/ok but the directory is not deleted
![image](/uploads/3b6913146624e853d83c524a728a59e4/image.png)If the user enter an existing user on unix server, and this user do not have permission, the return is true/ok but the directory is not deleted
![image](/uploads/3b6913146624e853d83c524a728a59e4/image.png)V3.2 - Slurm2018-06-30