ng6 issueshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues2019-10-25T13:19:41+02:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/131[ont-qc] Add .pdf file into ng6 analysis for nanopore runs2019-10-25T13:19:41+02:00Roxane Boyer[ont-qc] Add .pdf file into ng6 analysis for nanopore runsThe pdf file would be in the same location than the jflow and the log file. So into /work/sbsuser/data/Nanopore/RUN_REP/jflow.
It would be named report.pdfThe pdf file would be in the same location than the jflow and the log file. So into /work/sbsuser/data/Nanopore/RUN_REP/jflow.
It would be named report.pdfV3.2.6Audrey GibertAudrey Giberthttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/119add the run/analysis status in the summary table2020-01-10T10:28:33+01:00Gerald Salingerald.salin@inra.fradd the run/analysis status in the summary table![image](/uploads/f8e0cf2161a5f2efae6dc3a467633997/image.png)
@celine.noirot @ckuchly what do you think about it?
this way, the user has directly the information regarding the purge state![image](/uploads/f8e0cf2161a5f2efae6dc3a467633997/image.png)
@celine.noirot @ckuchly what do you think about it?
this way, the user has directly the information regarding the purge stateV3.2.6https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/112[ont-qc] Adding new analysis : Demultiplex Stat for ONT2021-03-25T13:39:09+01:00Maxime Manno[ont-qc] Adding new analysis : Demultiplex Stat for ONT#### We need to change the current demultiplex stat analysis management : :metal:
**What will change ?** replacement of porechop by Qcat, creation of a new analysis
* [x] Create new component
* [x] Create new template
* [x] Add seqki...#### We need to change the current demultiplex stat analysis management : :metal:
**What will change ?** replacement of porechop by Qcat, creation of a new analysis
* [x] Create new component
* [x] Create new template
* [x] Add seqkit stats logs for all the samples (included the unmappaed files)
* [x] Add fastq files only for the barcodes added into the pool
* [x] Add Qcat and Seqkit path and oprions into the application.propertiesV4 - MaintenanceMaxime MannoMaxime Manno2019-08-31https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/111[ont-qc] Adding logs to ont-qc analysis2019-07-23T09:22:06+02:00Maxime Manno[ont-qc] Adding logs to ont-qc analysis#### It should have log files from :
* [x] the Merkaat pipeline log
* [x] final status run summary log#### It should have log files from :
* [x] the Merkaat pipeline log
* [x] final status run summary logV3.2.4Maxime MannoMaxime Manno2019-07-31https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/110handle several data space2019-09-06T17:11:30+02:00Celine Noirothandle several data spaceFor seqOccIn project need to handle several project space.
To do:
* [x] handle different space when add run/analyse/project ...
* [x] handle different retention date thanks to space_id
* [x] handle spaces in download plugin
Validatio...For seqOccIn project need to handle several project space.
To do:
* [x] handle different space when add run/analyse/project ...
* [x] handle different retention date thanks to space_id
* [x] handle spaces in download plugin
Validation to be checked :
* [x] addproject with default space
* [x] addproject with specific space
* [x] addrun to a project with a specific space -> run data are in space ?
* [x] addanalysis to a project with a specific space -> analysis data are in space ?
* [x] addanalysis to a run with a specific space -> analysis data are in space ?V3.2.5Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/12Add visualisation and compute of stored/purged size per group/lab2018-07-18T15:48:10+02:00Celine NoirotAdd visualisation and compute of stored/purged size per group/labAdd visualisation of stored/purged size per group/lab
Generate a table and a graphics.Add visualisation of stored/purged size per group/lab
Generate a table and a graphics.V3.1 - PurgeCeline NoirotCeline Noirot2018-06-29https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/9Regenerate a password for users added by the project manager2020-01-22T16:22:03+01:00Audrey GibertRegenerate a password for users added by the project managerFor now, there is no possibility for a user added by the project manager to regenerate their password.
=> It has to be addedFor now, there is no possibility for a user added by the project manager to regenerate their password.
=> It has to be addedRomain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/4ONT_QC analysis : Fast5archive component bug with multiple runs2018-03-30T10:38:47+02:00Maxime MannoONT_QC analysis : Fast5archive component bug with multiple runsIf a run has been launch many times, it has multiple subdirectory of raw data that we have to tar with différents namesIf a run has been launch many times, it has multiple subdirectory of raw data that we have to tar with différents namesV3.3 - ONT_QC analysisMaxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/1Mail de relance2018-06-27T18:32:33+02:00Celine NoirotMail de relanceProposer un mail de relance, une fois que la purge déjà été demandéeProposer un mail de relance, une fois que la purge déjà été demandéeV3.1 - Purge2018-04-30