ng6 issueshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues2022-04-26T14:00:49+02:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/224Project page : Remove the "Raw data and analysis results use xxx"2022-04-26T14:00:49+02:00Romain ThervilleProject page : Remove the "Raw data and analysis results use xxx"This part of the page is computed on the fly, and does not exclude hidden elements. It can be removed.This part of the page is computed on the fly, and does not exclude hidden elements. It can be removed.V3.3Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/214add a link to the reinit password interface2021-10-12T08:47:06+02:00Gerald Salingerald.salin@inra.fradd a link to the reinit password interfaceV3.3Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/213upgrade to typo3 v102021-10-12T08:47:15+02:00Gerald Salingerald.salin@inra.frupgrade to typo3 v10V3.3Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/204smarty deprecation warnins2021-05-04T11:48:23+02:00Gerald Salingerald.salin@inra.frsmarty deprecation warninsin backend error viewer :
Core: Error handler (FE): PHP Runtime Deprecation Notice: Function create_function() is deprecated in /usr/local/bioinfo/src/ng6_sources/ng6-V3.2.8/ui/nG6/res/smarty/libs/Smarty.class.php line 742
Core: Er...in backend error viewer :
Core: Error handler (FE): PHP Runtime Deprecation Notice: Function create_function() is deprecated in /usr/local/bioinfo/src/ng6_sources/ng6-V3.2.8/ui/nG6/res/smarty/libs/Smarty.class.php line 742
Core: Error handler (FE): PHP User Notice: function call 'assign_by_ref' is unknown or deprecated, use 'assignByRef' in /usr/local/bioinfo/src/ng6_sources/ng6-V3.2.8/ui/nG6/res/smarty/libs/sysplugins/smarty_internal_data.php line 79V3.2.8.1Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/200allow to display all entries of a datatable in an analysis2021-04-28T16:30:55+02:00Gerald Salingerald.salin@inra.frallow to display all entries of a datatable in an analysisV3.2.8.1Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/199update links2021-04-28T14:46:19+02:00Gerald Salingerald.salin@inra.frupdate linkswith the new typo3 version, links are human readable :
change the index.php?id=XX&WWWWWWW with the corresponding page slug in the source
and have to create redirects in apache for those who access the old linkswith the new typo3 version, links are human readable :
change the index.php?id=XX&WWWWWWW with the corresponding page slug in the source
and have to create redirects in apache for those who access the old linksV3.2.8.1Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/198upgrade to run under typo3 v92021-04-28T18:58:29+02:00Gerald Salingerald.salin@inra.frupgrade to run under typo3 v9V3.2.8Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/196mail method : some people does not receive mails sent by ng6-slurm2021-04-28T18:59:38+02:00Gerald Salingerald.salin@inra.frmail method : some people does not receive mails sent by ng6-slurmhttps://ariane.inrae.fr/block/?id=ariane_ticket&table=incident&sys_id=96e56e891bdfec102c571176bd4bcb76https://ariane.inrae.fr/block/?id=ariane_ticket&table=incident&sys_id=96e56e891bdfec102c571176bd4bcb76V3.2.8Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/189GPDR2021-04-23T15:07:08+02:00Gerald Salingerald.salin@inra.frGPDRadding a user to a project allows any authenticated manager user to access the list of all users, including their password :
![image](/uploads/02075d0ab92873342988603ae9e5c84a/image.png)adding a user to a project allows any authenticated manager user to access the list of all users, including their password :
![image](/uploads/02075d0ab92873342988603ae9e5c84a/image.png)V3.2.8https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/182[Web interface]Improve FAQ accesses2021-09-01T08:59:46+02:00Audrey Gibert[Web interface]Improve FAQ accesses2 ideas on the web interface :
* [x] on a project page, on the top-right corner below the data overview frame : adding a sentence "You can add a collaborator to your project : visit the [NG6 FAQ](https://ng6.toulouse.inra.fr/index.php?id...2 ideas on the web interface :
* [x] on a project page, on the top-right corner below the data overview frame : adding a sentence "You can add a collaborator to your project : visit the [NG6 FAQ](https://ng6.toulouse.inra.fr/index.php?id=57) > How to add a user to my project?
* [x] On the run view, in the Raw Data tab, below the "Retention date" frame : adding "There is a fast way to retrieve your data, more information in the [NG6 FAQ](https://ng6.toulouse.inra.fr/index.php?id=57) > How to get my data?
* [x] On an analysis view, in the Download section, same sentence as above : "You can retrieve your data easily, more information in the [NG6 FAQ](https://ng6.toulouse.inra.fr/index.php?id=57) > How to get my data?
* [x] Be more explicit with the download by URL on windows in the FAQ
- [x] @gsalin : Add a news to signal the information!V3.3Gerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/179[purge] link analyzes to runs in the email2021-10-12T08:53:41+02:00Gerald Salingerald.salin@inra.fr[purge] link analyzes to runs in the emailFiles impacted of:
• Runs : NemaTools-1 (12035), NemaTools-1 (12336)
• Analyzes : IlluminaFilter (47020), ContaminationSearch (47027), ReadsStats (47035), IlluminaFilter (48330), ContaminationSearch (48338), ReadsStats (48339)
...Files impacted of:
• Runs : NemaTools-1 (12035), NemaTools-1 (12336)
• Analyzes : IlluminaFilter (47020), ContaminationSearch (47027), ReadsStats (47035), IlluminaFilter (48330), ContaminationSearch (48338), ReadsStats (48339)
to be transformed as
Files impacted of:
• Run NemaTools-1 (12035)
Analyzes : IlluminaFilter (47020), ContaminationSearch (47027), ReadsStats (47035),
• Run NemaTools-1 (12336)
Analyzes : IlluminaFilter (48330), ContaminationSearch (48338), ReadsStats (48339)V3.4Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/169FAQ style is ugly2020-02-11T14:32:56+01:00Celine NoirotFAQ style is uglyDo it less uglyDo it less uglyV3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/161A rework of the purge processes is needed2020-03-04T09:25:59+01:00Romain ThervilleA rework of the purge processes is neededWith the new retention, space and migration features, a few new cases have to be handled by the purge system:
* New mail model, for the projects in shortterm storage (4 months), that indicate 1 month in advance that the data are going ...With the new retention, space and migration features, a few new cases have to be handled by the purge system:
* New mail model, for the projects in shortterm storage (4 months), that indicate 1 month in advance that the data are going to be deleted.
No extention is allowed in this case.
* A new CRON that sends the purge mail one month before the data deletion and opens a purge request (Admin > Mail obsolete projects).
* A new CRON (every week) to send to the ng6 administrators the list of the last purge mails sent.V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/156Style error2020-04-03T14:00:13+02:00Celine NoirotStyle error- Cadre pour les projets chevauchant et n'utilise pas tout l'espace
- foooter non centré- Cadre pour les projets chevauchant et n'utilise pas tout l'espace
- foooter non centréV3.2.6Celine NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/151Add a space id column in Administration > Mail obsolete project2020-01-16T17:33:08+01:00Romain ThervilleAdd a space id column in Administration > Mail obsolete project- New space_id column
- Replace the "size greater than" filter with a "space_id" selection- New space_id column
- Replace the "size greater than" filter with a "space_id" selectionV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/146There are hard-coded links in Admin>Extend Project>Project name column2020-06-11T17:01:31+02:00Romain ThervilleThere are hard-coded links in Admin>Extend Project>Project name columnEx: href="index.php?id=3&tx_nG6_pi1[project_id]=1"
The "id=3" has to be recovered from the typo3 "plugin.tx_nG6_pi6.redirection_page" template value.
This is defined in tx_nG6_pi6.js, line 706.
The expected result would be href="index.p...Ex: href="index.php?id=3&tx_nG6_pi1[project_id]=1"
The "id=3" has to be recovered from the typo3 "plugin.tx_nG6_pi6.redirection_page" template value.
This is defined in tx_nG6_pi6.js, line 706.
The expected result would be href="index.php?**id=55**&tx_nG6_pi1[project_id]=1" .V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/129Script/workflow to migrate a list of project to from a space to another2020-11-30T11:30:50+01:00Celine NoirotScript/workflow to migrate a list of project to from a space to anotherDevelop a script to transfert a project from a storage space to another :
- change project space id
- change path of run, analyzes (of the project and of the runs)
- move filesDevelop a script to transfert a project from a storage space to another :
- change project space id
- change path of run, analyzes (of the project and of the runs)
- move filesV3.2.7.5Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/128Discard some email adress from purge email.2019-09-20T10:27:40+02:00Celine NoirotDiscard some email adress from purge email.Add a list a emails address to discard from purge email.
To be configure as "email_from"
Eg:
plugin.tx_nG6_pi6.email_to_discard = ctd@inra.fr,ng6-support@inra.fr
Remove thoses email from the list of destinator of the emailAdd a list a emails address to discard from purge email.
To be configure as "email_from"
Eg:
plugin.tx_nG6_pi6.email_to_discard = ctd@inra.fr,ng6-support@inra.fr
Remove thoses email from the list of destinator of the emailV3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/127Purge email should be send to all the users of the project.2019-09-20T11:37:40+02:00Celine NoirotPurge email should be send to all the users of the project.From now, email to alert for a purge has to be sent to all the member, administrator and manager of the project.From now, email to alert for a purge has to be sent to all the member, administrator and manager of the project.V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/126Add a new group superadmin2019-10-29T09:36:55+01:00Celine NoirotAdd a new group superadminDuring purge step, system administrator need to have access to all the project.
*Actually to do so, we add in production a nG6_ADMIN users which is added to all project manually (via sql query during purge process)*
It would be interest...During purge step, system administrator need to have access to all the project.
*Actually to do so, we add in production a nG6_ADMIN users which is added to all project manually (via sql query during purge process)*
It would be interesting to have a new group "superadmin" which give access to all the projects.V3.2.6Romain ThervilleRomain Therville