ng6 issueshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues2020-06-11T16:58:50+02:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/172When creating a project, the 'space' is not a select field2020-06-11T16:58:50+02:00Romain ThervilleWhen creating a project, the 'space' is not a select fieldThere must be a problem with the add_project form, or the 'ng6space' data type.There must be a problem with the add_project form, or the 'ng6space' data type.V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/171Unable to add an analysis on web interface2020-06-11T16:58:26+02:00Celine NoirotUnable to add an analysis on web interfacewith a server file, on a project, run button on form addanalysis do nothing !with a server file, on a project, run button on form addanalysis do nothing !V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/163Broken links in adminstration pages2020-06-11T17:01:15+02:00Romain ThervilleBroken links in adminstration pagesThere are broken links in the administration page:
- In the "Mail obsolete" tab, the project links.
- In the "Process mail demands" tab, the project links.
For more information on how to resolve this, check the issue #146.There are broken links in the administration page:
- In the "Mail obsolete" tab, the project links.
- In the "Process mail demands" tab, the project links.
For more information on how to resolve this, check the issue #146.V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/162Change the way the number of reads and the base pair for run information are ...2022-12-16T16:21:27+01:00Claire KuchlyChange the way the number of reads and the base pair for run information are calculated in the 10X analysisThe number of reads and base pair are calculed in all fileS ( R1, R2, I) or we want to have just the R1 and R2 informations.The number of reads and base pair are calculed in all fileS ( R1, R2, I) or we want to have just the R1 and R2 informations.Claire KuchlyClaire Kuchly2020-02-29https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/160Error when updating a user's email on nG62021-05-04T11:18:53+02:00Romain ThervilleError when updating a user's email on nG6When logged as CTD, on the project "HOLISTIC", I tried to update MAJJ's email, and the new email has been set for CTD instead of MAJJ.
![2020-01-21_113722](/uploads/33afb05071f8d7d0382a0a7743fd2fd8/2020-01-21_113722.png)
Was it because...When logged as CTD, on the project "HOLISTIC", I tried to update MAJJ's email, and the new email has been set for CTD instead of MAJJ.
![2020-01-21_113722](/uploads/33afb05071f8d7d0382a0a7743fd2fd8/2020-01-21_113722.png)
Was it because CTD was on top of the list, or because the logged user was CTD?
Anyway, it's an issue.V3.2.8.1Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/158On nG6, trying a project space migration results in a wf that stays "started"2020-06-11T17:02:37+02:00Romain ThervilleOn nG6, trying a project space migration results in a wf that stays "started"Since the last update, I have tried validating the migration feature in production environment, and a bug occured.
* The workflow stays started:
![Sans_titre](/uploads/607ad112d43bc1d57610f4308af1fda2/Sans_titre.png)
* The directorie...Since the last update, I have tried validating the migration feature in production environment, and a bug occured.
* The workflow stays started:
![Sans_titre](/uploads/607ad112d43bc1d57610f4308af1fda2/Sans_titre.png)
* The directories generated by Makeflow have "root" as Owner and group:
```
[root@ng6-slurm switchspaceid]# pwd
/work/ng6/jflow/work/switchspaceid
[root@ng6-slurm switchspaceid]# ls -lt
total 6
drwxr-x--x 4 root root 4096 17 janv. 09:05 wf004643
drwxr-x--x 4 root root 4096 16 janv. 16:11 wf004638
drwxr-x--x 4 ng6 ng6 4096 15 janv. 17:28 wf004616
drwxr-x--x 4 ng6 ng6 4096 10 janv. 14:48 wf004542
drwxr-x--x 4 ng6 ng6 4096 24 déc. 13:48 wf004448
drwxr-x--x 4 ng6 ng6 4096 24 déc. 13:39 wf004447
drwxr-x--x 4 ng6 ng6 4096 24 déc. 13:35 wf004446
drwxr-x--x 4 ng6 ng6 4096 24 déc. 13:22 wf004445
drwxr-x--x 4 ng6 ng6 4096 23 déc. 15:57 wf004440
drwxr-x--x 4 ng6 ng6 4096 11 déc. 16:45 wf004238
drwxr-x--x 4 ng6 ng6 4096 11 déc. 16:38 wf004237
```
* No ".stdout" log file, and not much more infos in ng6.log:
```
01-17 09:05 MoveProject.process DEBUG Begin MoveProject Component.
01-17 09:05 MoveProject.process DEBUG self.space_id=seqoccin
01-17 09:05 MoveProject.process DEBUG self.project_id=1518
01-17 09:05 MoveProject.process DEBUG stdout = /work/ng6/jflow/work/switchspaceid/wf004643/MoveProject_default/MoveProject.stdout
```V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/157Workflow addproject introuvable2020-06-11T17:12:34+02:00Romain ThervilleWorkflow addproject introuvableManque 1 import dans /workflows/addproject/__init__.py
Chargement infini en tentant addproject depuis l'interface web, et addproject est le seul workflow qui n'apparait pas dans get_available_workflows.
Plus d'infos dans le commit à sui...Manque 1 import dans /workflows/addproject/__init__.py
Chargement infini en tentant addproject depuis l'interface web, et addproject est le seul workflow qui n'apparait pas dans get_available_workflows.
Plus d'infos dans le commit à suivre.V3.2.6Romain ThervilleRomain Therville2020-01-16https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/150The "send mail" footer covers 10 columns instead of 11.2020-06-11T17:05:13+02:00Romain ThervilleThe "send mail" footer covers 10 columns instead of 11.In Administration > Mail obsolete project, the last table line has a bad display.
`<th colspan="10"> should be replaced with <th colspan="11">.`In Administration > Mail obsolete project, the last table line has a bad display.
`<th colspan="10"> should be replaced with <th colspan="11">.`V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/147unable to authenticate with CTD account2020-06-11T17:05:23+02:00Gerald Salingerald.salin@inra.frunable to authenticate with CTD accountAlready happened last week....
this morning, Marine succeeded in login on ng6.
few minutes ago, impossible to login. Tested on my computer : same problem
>update the password (copy/paste from e-SIToul) solved the problem...
after succe...Already happened last week....
this morning, Marine succeeded in login on ng6.
few minutes ago, impossible to login. Tested on my computer : same problem
>update the password (copy/paste from e-SIToul) solved the problem...
after successful login, it seems the password is updated in the database :
$1$xxxxx instead of $2a$10$xxxxxyyyyRomain ThervilleRomain Therville2019-12-10https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/146There are hard-coded links in Admin>Extend Project>Project name column2020-06-11T17:01:31+02:00Romain ThervilleThere are hard-coded links in Admin>Extend Project>Project name columnEx: href="index.php?id=3&tx_nG6_pi1[project_id]=1"
The "id=3" has to be recovered from the typo3 "plugin.tx_nG6_pi6.redirection_page" template value.
This is defined in tx_nG6_pi6.js, line 706.
The expected result would be href="index.p...Ex: href="index.php?id=3&tx_nG6_pi1[project_id]=1"
The "id=3" has to be recovered from the typo3 "plugin.tx_nG6_pi6.redirection_page" template value.
This is defined in tx_nG6_pi6.js, line 706.
The expected result would be href="index.php?**id=55**&tx_nG6_pi1[project_id]=1" .V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/140"Random password generation" + "send mail" doesn't work with superadmin superCTD2020-06-11T17:05:46+02:00Romain Therville"Random password generation" + "send mail" doesn't work with superadmin superCTDWhen trying to regenerate a random password via the nG6 web interface, when logged as superCTD, no mail is sent to the final user.
We should check if the password is updated, and find out why no mail is sent.When trying to regenerate a random password via the nG6 web interface, when logged as superCTD, no mail is sent to the final user.
We should check if the password is updated, and find out why no mail is sent.V3.2.7Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/136Fail to update a user's role on a project2020-06-11T17:08:53+02:00Romain ThervilleFail to update a user's role on a projectOn nG6 (prod), the user 513 was both member and admin on a project.
We should check if another user is concerned, and find why there were 2 rows in 'fe_rights' linking the user to the project.
Kanboard link : https://genomique.genotoul...On nG6 (prod), the user 513 was both member and admin on a project.
We should check if another user is concerned, and find why there were 2 rows in 'fe_rights' linking the user to the project.
Kanboard link : https://genomique.genotoul.fr/kanboard/?controller=TaskViewController&action=show&project_id=18&task_id=1132V4 - MaintenanceRomain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/125Differences between projet's hidden parameter and its run's hidden parameter2020-06-11T17:09:11+02:00Romain ThervilleDifferences between projet's hidden parameter and its run's hidden parameterSometimes (see exemple), hidden projects have visible analyses. Sometimes they do not.
http://ng6-test.toulouse.inra.fr
Project **FlaxCoreCol**
![2019-09-05_172449](/uploads/82d77c3e33ce35a60eb412286fa9d529/2019-09-05_172449.png)
Proj...Sometimes (see exemple), hidden projects have visible analyses. Sometimes they do not.
http://ng6-test.toulouse.inra.fr
Project **FlaxCoreCol**
![2019-09-05_172449](/uploads/82d77c3e33ce35a60eb412286fa9d529/2019-09-05_172449.png)
Project **FlaxCoreCol** Run **FlaxCoreCol-3** (recent)
![2019-09-05_172520](/uploads/bfbc0dea5ea36649347228321404ebd5/2019-09-05_172520.png)
Project **FlaxCoreCol** Run **FlaxCoreCol-4** (older)
![2019-09-05_172649](/uploads/05b5faaf00dc4f2f9d7ef39d0d8caca9/2019-09-05_172649.png)
(At least the icons are missing, but a check in the database is necessary.)V4 - MaintenanceRomain ThervilleRomain Therville