ng6 issueshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues2018-03-30T10:38:47+02:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/4ONT_QC analysis : Fast5archive component bug with multiple runs2018-03-30T10:38:47+02:00Maxime MannoONT_QC analysis : Fast5archive component bug with multiple runsIf a run has been launch many times, it has multiple subdirectory of raw data that we have to tar with différents namesIf a run has been launch many times, it has multiple subdirectory of raw data that we have to tar with différents namesV3.3 - ONT_QC analysisMaxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/2Purge : somme par projet incoherente2018-06-19T15:08:13+02:00Celine NoirotPurge : somme par projet incoherenteLa somme des données "purgeables" n'est pas coherente dans le table de puge.La somme des données "purgeables" n'est pas coherente dans le table de puge.V3.1 - PurgeClaire KuchlyClaire Kuchly2018-04-18https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/19Bug project view nb run / analyse / size2018-06-20T16:49:27+02:00Celine NoirotBug project view nb run / analyse / size![ng6-project-bug](/uploads/a9a4a23eb23a55520cae49a853623d8e/ng6-project-bug.png)![ng6-project-bug](/uploads/a9a4a23eb23a55520cae49a853623d8e/ng6-project-bug.png)V3.1 - Purge2018-06-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/20Bug purge managment view : total purgeable size false2018-06-21T13:25:30+02:00Celine NoirotBug purge managment view : total purgeable size false![prod-ng6](/uploads/a65c6c3e0444eda15926e004995a55b6/prod-ng6.png)![prod-ng6](/uploads/a65c6c3e0444eda15926e004995a55b6/prod-ng6.png)V3.1 - Purgehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/22Do not extend run/analyse if date is lower than retention_date2018-06-25T18:51:40+02:00Celine NoirotDo not extend run/analyse if date is lower than retention_dateWhen extend a project entirely, do not change date if it's lower than the retention_dateWhen extend a project entirely, do not change date if it's lower than the retention_dateV3.1 - PurgeCeline NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/24deletion of demand purge don't work2018-06-29T15:54:26+02:00Celine Noirotdeletion of demand purge don't workReturn always error unable to delete.Return always error unable to delete.V3.1 - PurgeClaire KuchlyClaire Kuchly2018-06-29https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/25after extending a part of project values in Data overview project are false2018-06-29T16:43:21+02:00Celine Noirotafter extending a part of project values in Data overview project are false![image](/uploads/cf5fda99787f29d34f38d5d4f20656a7/image.png)![image](/uploads/cf5fda99787f29d34f38d5d4f20656a7/image.png)V3.1 - PurgeCeline NoirotCeline Noirot2018-06-28https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/17Add project extention2018-07-18T15:48:10+02:00Celine NoirotAdd project extentionIf a project has a obsolete run (not all), all its run or analysis can be extentedIf a project has a obsolete run (not all), all its run or analysis can be extentedV3.1 - PurgeCeline NoirotCeline Noirot2018-06-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/11Correct list of id analyse and run stored in db for a purge demand2018-08-02T14:55:49+02:00Celine NoirotCorrect list of id analyse and run stored in db for a purge demandWhen purge was created, a bug stored all values of a project
Correct the list of analyse id and run id before launching the purge
Think to also remove the purge id field to the analyses and the runsWhen purge was created, a bug stored all values of a project
Correct the list of analyse id and run id before launching the purge
Think to also remove the purge id field to the analyses and the runsV3.1 - PurgeCeline NoirotCeline Noirot2018-06-29https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/38unable to delete runs or analyses from the ui2018-08-08T13:10:18+02:00Gerald Salingerald.salin@inra.frunable to delete runs or analyses from the uierror :
`08-08-18 08:07 - Core: Exception handler (WEB): Uncaught TYPO3 Exception: Call to undefined function ssh2_connect() | Error thrown in file /save/ng6-test/src/ng6-git-gsalin/nG6_ui_slurm/class.tx_nG6_eid.php in line 158. Request...error :
`08-08-18 08:07 - Core: Exception handler (WEB): Uncaught TYPO3 Exception: Call to undefined function ssh2_connect() | Error thrown in file /save/ng6-test/src/ng6-git-gsalin/nG6_ui_slurm/class.tx_nG6_eid.php in line 158. Requested URL: http://ng6-slurm.toulouse.inra.fr/ng6-mmanno/index.php?eID=tx_nG6&type=delete&del_level=analysis&data_folder=/work/ng6-test/jflow_mmanno/ng6&user_login=ng6-test&user_pwd=ng6L12*&user_id=4&ids=50717`V3.2 - SlurmGerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.fr2018-08-28https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/47illumina_rnaseq in error, whereas all is fine2018-08-13T10:42:58+02:00Gerald Salingerald.salin@inra.frillumina_rnaseq in error, whereas all is fineseems the jflow output for the rnaseq pipeline can't be done due to the following error, and the workflow has the status "Failed"
![image](/uploads/d0fdbdcdbe941cff1cc9e12ef0731d93/image.png)seems the jflow output for the rnaseq pipeline can't be done due to the following error, and the workflow has the status "Failed"
![image](/uploads/d0fdbdcdbe941cff1cc9e12ef0731d93/image.png)V3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/61update user form, data is not loaded2018-08-14T13:39:42+02:00Gerald Salingerald.salin@inra.frupdate user form, data is not loaded![image](/uploads/7614712925c7139278b1a0d19068bc78/image.png)![image](/uploads/7614712925c7139278b1a0d19068bc78/image.png)V3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/21Delete Analyse or run from project view or run view2018-08-14T14:13:03+02:00Celine NoirotDelete Analyse or run from project view or run viewIf the user enter an existing user on unix server, and this user do not have permission, the return is true/ok but the directory is not deleted
![image](/uploads/3b6913146624e853d83c524a728a59e4/image.png)If the user enter an existing user on unix server, and this user do not have permission, the return is true/ok but the directory is not deleted
![image](/uploads/3b6913146624e853d83c524a728a59e4/image.png)V3.2 - Slurm2018-06-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/41users linked to a project ndo not appear2018-08-28T14:13:00+02:00Gerald Salingerald.salin@inra.frusers linked to a project ndo not appear![image](/uploads/67b486f36a6584c100cbd996358516ff/image.png)![image](/uploads/67b486f36a6584c100cbd996358516ff/image.png)V3.2 - SlurmGerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/5Bug ng6_cli status --all and on the interface2018-08-28T14:15:51+02:00Maxime MannoBug ng6_cli status --all and on the interfaceAfter the upgrade of nG6_Git, the command ng6_cli status --all did not workAfter the upgrade of nG6_Git, the command ng6_cli status --all did not workV3.2 - SlurmClaire KuchlyClaire Kuchlyhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/26Erreur dans la console ZeroClipboard.min.map2018-08-28T14:18:21+02:00Celine NoirotErreur dans la console ZeroClipboard.min.mapVerifier l'url de ZeroClipboard dans les js de jflow.
![image](/uploads/b15985622e50feb2ce1856f66dbcb1cc/image.png)Verifier l'url de ZeroClipboard dans les js de jflow.
![image](/uploads/b15985622e50feb2ce1856f66dbcb1cc/image.png)https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/76Admin > Statisctis does not work2018-10-01T13:04:35+02:00Gerald Salingerald.salin@inra.frAdmin > Statisctis does not work> 01-10-18 10:54 - Core: Exception handler (WEB): Uncaught TYPO3 Exception: Call to undefined function split() | Error thrown in file /save/ng6-test/src/ng6-git-gsalin/ui/nG6/class.tx_nG6_eid.php in line 808. Requested URL: http://ng6-s...> 01-10-18 10:54 - Core: Exception handler (WEB): Uncaught TYPO3 Exception: Call to undefined function split() | Error thrown in file /save/ng6-test/src/ng6-git-gsalin/ui/nG6/class.tx_nG6_eid.php in line 808. Requested URL: http://ng6-slurm.toulouse.inra.fr/ng6-mmanno/index.php?eID=tx_nG6&type=project_distribution&by=title&role=create_user&values=BIA,Bioinfo%20GENOTOULV3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/75bug in purge management2018-10-01T13:04:43+02:00Gerald Salingerald.salin@inra.frbug in purge managementpurge management doe not work with new versio of typo3purge management doe not work with new versio of typo3V3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/78"Process mail demands" does not work with new version of typo32018-10-01T14:30:00+02:00Gerald Salingerald.salin@inra.fr"Process mail demands" does not work with new version of typo3no records found
delay_purge is not set in the ajax requestno records found
delay_purge is not set in the ajax requestV3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/77Process mail demands : delay exceed always to "no"2018-10-01T14:30:06+02:00Gerald Salingerald.salin@inra.frProcess mail demands : delay exceed always to "no"whereas we know some have delay exceededwhereas we know some have delay exceededV3.2 - Slurm