ng6 issueshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues2018-06-19T15:08:13+02:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/2Purge : somme par projet incoherente2018-06-19T15:08:13+02:00Celine NoirotPurge : somme par projet incoherenteLa somme des données "purgeables" n'est pas coherente dans le table de puge.La somme des données "purgeables" n'est pas coherente dans le table de puge.V3.1 - PurgeClaire KuchlyClaire Kuchly2018-04-18https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/4ONT_QC analysis : Fast5archive component bug with multiple runs2018-03-30T10:38:47+02:00Maxime MannoONT_QC analysis : Fast5archive component bug with multiple runsIf a run has been launch many times, it has multiple subdirectory of raw data that we have to tar with différents namesIf a run has been launch many times, it has multiple subdirectory of raw data that we have to tar with différents namesV3.3 - ONT_QC analysisMaxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/5Bug ng6_cli status --all and on the interface2018-08-28T14:15:51+02:00Maxime MannoBug ng6_cli status --all and on the interfaceAfter the upgrade of nG6_Git, the command ng6_cli status --all did not workAfter the upgrade of nG6_Git, the command ng6_cli status --all did not workV3.2 - SlurmClaire KuchlyClaire Kuchlyhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/8Metacharacter "&" in password creates a bug2019-09-12T09:27:13+02:00Audrey GibertMetacharacter "&" in password creates a bugWhen "&" is in the password, the registered password stops just before the "&" :
Example:
if "hgff&ld" is written,
the registered password in the database is "hgff"When "&" is in the password, the registered password stops just before the "&" :
Example:
if "hgff&ld" is written,
the registered password in the database is "hgff"V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/11Correct list of id analyse and run stored in db for a purge demand2018-08-02T14:55:49+02:00Celine NoirotCorrect list of id analyse and run stored in db for a purge demandWhen purge was created, a bug stored all values of a project
Correct the list of analyse id and run id before launching the purge
Think to also remove the purge id field to the analyses and the runsWhen purge was created, a bug stored all values of a project
Correct the list of analyse id and run id before launching the purge
Think to also remove the purge id field to the analyses and the runsV3.1 - PurgeCeline NoirotCeline Noirot2018-06-29https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/16generate script to compute storage size for extention2019-07-23T14:15:59+02:00Celine Noirotgenerate script to compute storage size for extentionV3.1 - Purge2018-06-29https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/17Add project extention2018-07-18T15:48:10+02:00Celine NoirotAdd project extentionIf a project has a obsolete run (not all), all its run or analysis can be extentedIf a project has a obsolete run (not all), all its run or analysis can be extentedV3.1 - PurgeCeline NoirotCeline Noirot2018-06-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/19Bug project view nb run / analyse / size2018-06-20T16:49:27+02:00Celine NoirotBug project view nb run / analyse / size![ng6-project-bug](/uploads/a9a4a23eb23a55520cae49a853623d8e/ng6-project-bug.png)![ng6-project-bug](/uploads/a9a4a23eb23a55520cae49a853623d8e/ng6-project-bug.png)V3.1 - Purge2018-06-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/20Bug purge managment view : total purgeable size false2018-06-21T13:25:30+02:00Celine NoirotBug purge managment view : total purgeable size false![prod-ng6](/uploads/a65c6c3e0444eda15926e004995a55b6/prod-ng6.png)![prod-ng6](/uploads/a65c6c3e0444eda15926e004995a55b6/prod-ng6.png)V3.1 - Purgehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/21Delete Analyse or run from project view or run view2018-08-14T14:13:03+02:00Celine NoirotDelete Analyse or run from project view or run viewIf the user enter an existing user on unix server, and this user do not have permission, the return is true/ok but the directory is not deleted
![image](/uploads/3b6913146624e853d83c524a728a59e4/image.png)If the user enter an existing user on unix server, and this user do not have permission, the return is true/ok but the directory is not deleted
![image](/uploads/3b6913146624e853d83c524a728a59e4/image.png)V3.2 - Slurm2018-06-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/22Do not extend run/analyse if date is lower than retention_date2018-06-25T18:51:40+02:00Celine NoirotDo not extend run/analyse if date is lower than retention_dateWhen extend a project entirely, do not change date if it's lower than the retention_dateWhen extend a project entirely, do not change date if it's lower than the retention_dateV3.1 - PurgeCeline NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/24deletion of demand purge don't work2018-06-29T15:54:26+02:00Celine Noirotdeletion of demand purge don't workReturn always error unable to delete.Return always error unable to delete.V3.1 - PurgeClaire KuchlyClaire Kuchly2018-06-29https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/25after extending a part of project values in Data overview project are false2018-06-29T16:43:21+02:00Celine Noirotafter extending a part of project values in Data overview project are false![image](/uploads/cf5fda99787f29d34f38d5d4f20656a7/image.png)![image](/uploads/cf5fda99787f29d34f38d5d4f20656a7/image.png)V3.1 - PurgeCeline NoirotCeline Noirot2018-06-28https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/26Erreur dans la console ZeroClipboard.min.map2018-08-28T14:18:21+02:00Celine NoirotErreur dans la console ZeroClipboard.min.mapVerifier l'url de ZeroClipboard dans les js de jflow.
![image](/uploads/b15985622e50feb2ce1856f66dbcb1cc/image.png)Verifier l'url de ZeroClipboard dans les js de jflow.
![image](/uploads/b15985622e50feb2ce1856f66dbcb1cc/image.png)https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/27Project view : hidden run and analyses are counted2019-09-18T17:27:36+02:00Celine NoirotProject view : hidden run and analyses are countedIn data overview hidden project are counted
![image](/uploads/14b9494bc2aedd913f56bf7bf8c0c025/image.png)In data overview hidden project are counted
![image](/uploads/14b9494bc2aedd913f56bf7bf8c0c025/image.png)V3.2.6Romain ThervilleRomain Thervillehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/38unable to delete runs or analyses from the ui2018-08-08T13:10:18+02:00Gerald Salingerald.salin@inra.frunable to delete runs or analyses from the uierror :
`08-08-18 08:07 - Core: Exception handler (WEB): Uncaught TYPO3 Exception: Call to undefined function ssh2_connect() | Error thrown in file /save/ng6-test/src/ng6-git-gsalin/nG6_ui_slurm/class.tx_nG6_eid.php in line 158. Request...error :
`08-08-18 08:07 - Core: Exception handler (WEB): Uncaught TYPO3 Exception: Call to undefined function ssh2_connect() | Error thrown in file /save/ng6-test/src/ng6-git-gsalin/nG6_ui_slurm/class.tx_nG6_eid.php in line 158. Requested URL: http://ng6-slurm.toulouse.inra.fr/ng6-mmanno/index.php?eID=tx_nG6&type=delete&del_level=analysis&data_folder=/work/ng6-test/jflow_mmanno/ng6&user_login=ng6-test&user_pwd=ng6L12*&user_id=4&ids=50717`V3.2 - SlurmGerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.fr2018-08-28https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/41users linked to a project ndo not appear2018-08-28T14:13:00+02:00Gerald Salingerald.salin@inra.frusers linked to a project ndo not appear![image](/uploads/67b486f36a6584c100cbd996358516ff/image.png)![image](/uploads/67b486f36a6584c100cbd996358516ff/image.png)V3.2 - SlurmGerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/47illumina_rnaseq in error, whereas all is fine2018-08-13T10:42:58+02:00Gerald Salingerald.salin@inra.frillumina_rnaseq in error, whereas all is fineseems the jflow output for the rnaseq pipeline can't be done due to the following error, and the workflow has the status "Failed"
![image](/uploads/d0fdbdcdbe941cff1cc9e12ef0731d93/image.png)seems the jflow output for the rnaseq pipeline can't be done due to the following error, and the workflow has the status "Failed"
![image](/uploads/d0fdbdcdbe941cff1cc9e12ef0731d93/image.png)V3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/61update user form, data is not loaded2018-08-14T13:39:42+02:00Gerald Salingerald.salin@inra.frupdate user form, data is not loaded![image](/uploads/7614712925c7139278b1a0d19068bc78/image.png)![image](/uploads/7614712925c7139278b1a0d19068bc78/image.png)V3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/74ONT-QC bug with l502019-01-04T17:45:19+01:00Maxime MannoONT-QC bug with l50we removed the L50 from the R script, and the workflow need this informationwe removed the L50 from the R script, and the workflow need this informationV3.2.2Maxime MannoMaxime Manno