ng6 issueshttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues2018-12-20T18:05:34+01:00https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/88sending email from update user window does not work2018-12-20T18:05:34+01:00Gerald Salingerald.salin@inra.frsending email from update user window does not workno email is sent, no error ion the javascript console....no email is sent, no error ion the javascript console....V3.2.1https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/84no template for BasicAnalyse2018-10-22T12:59:26+02:00Gerald Salingerald.salin@inra.frno template for BasicAnalysecf Maria.
The template does not exist
copy from BasicAnalysis.tplcf Maria.
The template does not exist
copy from BasicAnalysis.tplV3.2.1https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/82Error downloading data with symlink and url2018-10-22T12:59:40+02:00Gerald Salingerald.salin@inra.frError downloading data with symlink and urlcan select data to download bug jflow workflow failed
* for symlink : trying to connect with ssh, but errors in keys in knownhosts. Deleting keys regarding ng6-slurm and 147.99.107.64 solved the problem
* for url : tries to open in the ...can select data to download bug jflow workflow failed
* for symlink : trying to connect with ssh, but errors in keys in knownhosts. Deleting keys regarding ng6-slurm and 147.99.107.64 solved the problem
* for url : tries to open in the browser a url prefix with http instead of httpsV3.2.1https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/80methyl_seq - template Bismark error displaying2018-10-16T17:19:32+02:00Gerald Salingerald.salin@inra.frmethyl_seq - template Bismark error displaying08-10-18 11:09 - Core: Exception handler (WEB): Uncaught TYPO3 Exception: Too few arguments to function smarty_modifier_get_description(), 1 passed in /save/ng6-test/src/ng6-git-gsalin/ui/nG6/res/smarty/templates_c/320094d0cb490e0a640ff2...08-10-18 11:09 - Core: Exception handler (WEB): Uncaught TYPO3 Exception: Too few arguments to function smarty_modifier_get_description(), 1 passed in /save/ng6-test/src/ng6-git-gsalin/ui/nG6/res/smarty/templates_c/320094d0cb490e0a640ff26100dfbb61200023b2.file.Bismark.tpl.php on line 159 and exactly 2 expected | ArgumentCountError thrown in file /save/ng6-test/src/ng6-git-gsalin/ui/nG6/res/smarty/libs/plugins/modifier.get_description.php in line 177. Requested URL: http://ng6-slurm.toulouse.inra.fr/ng6-mmanno/index.php?id=55&tx_nG6_pi1%5Banalyze_id%5D=55299&tx_nG6_pi1%5Bproject_id%5D=7&tx_nG6_pi1%5Brun_id%5D=14200
![image](/uploads/1d71ea9dd0f07714692a5d1832293e27/image.png)V3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/79bug sending mail for purge demand while user disconnected2018-10-01T19:35:52+02:00Gerald Salingerald.salin@inra.frbug sending mail for purge demand while user disconnectedafter a while, the user is dosconnected from the interface.
we can still send mail for purge management
but the purge_deman_id is 0...after a while, the user is dosconnected from the interface.
we can still send mail for purge management
but the purge_deman_id is 0...V3.2 - SlurmGerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/78"Process mail demands" does not work with new version of typo32018-10-01T14:30:00+02:00Gerald Salingerald.salin@inra.fr"Process mail demands" does not work with new version of typo3no records found
delay_purge is not set in the ajax requestno records found
delay_purge is not set in the ajax requestV3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/77Process mail demands : delay exceed always to "no"2018-10-01T14:30:06+02:00Gerald Salingerald.salin@inra.frProcess mail demands : delay exceed always to "no"whereas we know some have delay exceededwhereas we know some have delay exceededV3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/76Admin > Statisctis does not work2018-10-01T13:04:35+02:00Gerald Salingerald.salin@inra.frAdmin > Statisctis does not work> 01-10-18 10:54 - Core: Exception handler (WEB): Uncaught TYPO3 Exception: Call to undefined function split() | Error thrown in file /save/ng6-test/src/ng6-git-gsalin/ui/nG6/class.tx_nG6_eid.php in line 808. Requested URL: http://ng6-s...> 01-10-18 10:54 - Core: Exception handler (WEB): Uncaught TYPO3 Exception: Call to undefined function split() | Error thrown in file /save/ng6-test/src/ng6-git-gsalin/ui/nG6/class.tx_nG6_eid.php in line 808. Requested URL: http://ng6-slurm.toulouse.inra.fr/ng6-mmanno/index.php?eID=tx_nG6&type=project_distribution&by=title&role=create_user&values=BIA,Bioinfo%20GENOTOULV3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/75bug in purge management2018-10-01T13:04:43+02:00Gerald Salingerald.salin@inra.frbug in purge managementpurge management doe not work with new versio of typo3purge management doe not work with new versio of typo3V3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/74ONT-QC bug with l502019-01-04T17:45:19+01:00Maxime MannoONT-QC bug with l50we removed the L50 from the R script, and the workflow need this informationwe removed the L50 from the R script, and the workflow need this informationV3.2.2Maxime MannoMaxime Mannohttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/61update user form, data is not loaded2018-08-14T13:39:42+02:00Gerald Salingerald.salin@inra.frupdate user form, data is not loaded![image](/uploads/7614712925c7139278b1a0d19068bc78/image.png)![image](/uploads/7614712925c7139278b1a0d19068bc78/image.png)V3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/47illumina_rnaseq in error, whereas all is fine2018-08-13T10:42:58+02:00Gerald Salingerald.salin@inra.frillumina_rnaseq in error, whereas all is fineseems the jflow output for the rnaseq pipeline can't be done due to the following error, and the workflow has the status "Failed"
![image](/uploads/d0fdbdcdbe941cff1cc9e12ef0731d93/image.png)seems the jflow output for the rnaseq pipeline can't be done due to the following error, and the workflow has the status "Failed"
![image](/uploads/d0fdbdcdbe941cff1cc9e12ef0731d93/image.png)V3.2 - Slurmhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/41users linked to a project ndo not appear2018-08-28T14:13:00+02:00Gerald Salingerald.salin@inra.frusers linked to a project ndo not appear![image](/uploads/67b486f36a6584c100cbd996358516ff/image.png)![image](/uploads/67b486f36a6584c100cbd996358516ff/image.png)V3.2 - SlurmGerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.frhttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/38unable to delete runs or analyses from the ui2018-08-08T13:10:18+02:00Gerald Salingerald.salin@inra.frunable to delete runs or analyses from the uierror :
`08-08-18 08:07 - Core: Exception handler (WEB): Uncaught TYPO3 Exception: Call to undefined function ssh2_connect() | Error thrown in file /save/ng6-test/src/ng6-git-gsalin/nG6_ui_slurm/class.tx_nG6_eid.php in line 158. Request...error :
`08-08-18 08:07 - Core: Exception handler (WEB): Uncaught TYPO3 Exception: Call to undefined function ssh2_connect() | Error thrown in file /save/ng6-test/src/ng6-git-gsalin/nG6_ui_slurm/class.tx_nG6_eid.php in line 158. Requested URL: http://ng6-slurm.toulouse.inra.fr/ng6-mmanno/index.php?eID=tx_nG6&type=delete&del_level=analysis&data_folder=/work/ng6-test/jflow_mmanno/ng6&user_login=ng6-test&user_pwd=ng6L12*&user_id=4&ids=50717`V3.2 - SlurmGerald Salingerald.salin@inra.frGerald Salingerald.salin@inra.fr2018-08-28https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/25after extending a part of project values in Data overview project are false2018-06-29T16:43:21+02:00Celine Noirotafter extending a part of project values in Data overview project are false![image](/uploads/cf5fda99787f29d34f38d5d4f20656a7/image.png)![image](/uploads/cf5fda99787f29d34f38d5d4f20656a7/image.png)V3.1 - PurgeCeline NoirotCeline Noirot2018-06-28https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/24deletion of demand purge don't work2018-06-29T15:54:26+02:00Celine Noirotdeletion of demand purge don't workReturn always error unable to delete.Return always error unable to delete.V3.1 - PurgeClaire KuchlyClaire Kuchly2018-06-29https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/22Do not extend run/analyse if date is lower than retention_date2018-06-25T18:51:40+02:00Celine NoirotDo not extend run/analyse if date is lower than retention_dateWhen extend a project entirely, do not change date if it's lower than the retention_dateWhen extend a project entirely, do not change date if it's lower than the retention_dateV3.1 - PurgeCeline NoirotCeline Noirothttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/21Delete Analyse or run from project view or run view2018-08-14T14:13:03+02:00Celine NoirotDelete Analyse or run from project view or run viewIf the user enter an existing user on unix server, and this user do not have permission, the return is true/ok but the directory is not deleted
![image](/uploads/3b6913146624e853d83c524a728a59e4/image.png)If the user enter an existing user on unix server, and this user do not have permission, the return is true/ok but the directory is not deleted
![image](/uploads/3b6913146624e853d83c524a728a59e4/image.png)V3.2 - Slurm2018-06-30https://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/20Bug purge managment view : total purgeable size false2018-06-21T13:25:30+02:00Celine NoirotBug purge managment view : total purgeable size false![prod-ng6](/uploads/a65c6c3e0444eda15926e004995a55b6/prod-ng6.png)![prod-ng6](/uploads/a65c6c3e0444eda15926e004995a55b6/prod-ng6.png)V3.1 - Purgehttps://forgemia.inra.fr/genotoul-bioinfo/ng6/-/issues/19Bug project view nb run / analyse / size2018-06-20T16:49:27+02:00Celine NoirotBug project view nb run / analyse / size![ng6-project-bug](/uploads/a9a4a23eb23a55520cae49a853623d8e/ng6-project-bug.png)![ng6-project-bug](/uploads/a9a4a23eb23a55520cae49a853623d8e/ng6-project-bug.png)V3.1 - Purge2018-06-30