1. 08 Jan, 2020 40 commits
  2. 07 Jan, 2020 40 commits
  3. 19 Dec, 2019 40 commits
    • Romain Therville's avatar
      Utils.py update · edcc9cc2
      Romain Therville authored
      The get_directories_structure_and_content() function has been reworked
      to make the projects, runs and analyzes names normalization way more
      consistent. This will solve the differences between sources and
      destinations in this function.
      
      issue #153
      edcc9cc2
  4. 28 Nov, 2019 40 commits
    • Romain Therville's avatar
      Huge update for the new migration workflow: · db1b75b8
      Romain Therville authored
      - New name : switch_space_id.
      - The given space id is checked in application.properties.
      - Most of the treatments have been moved to a "components" folder,
      allowing us to create easily a new "migrate_several_projects" (or
      "bulk_project_migration") later.
      - The workflow can be launched from the single project view on the nG6
      website, when logged a superadmin user.
      - The project's space_id is visible to everyone on the single project
      view.
      - A warning indicating that the migration updates the retention has been
      added to the workflow's form in single project view.
      - More logs in ng6.log, and the new log file MoveProject.stdout. (path
      exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout)
      - CSS updates for the project views.
      - For new space_ids, the <space_id>/run and <space_id>/analyze
      directories will be created if missing.
      
      
      Issue#129
      db1b75b8
    • ckuchly's avatar
      #143 : modified files who is analysed by fastqc, contaminationSearch and · 9b9e0e65
      ckuchly authored
      FastqIlluminaFilter.
      9b9e0e65
  5. 19 Nov, 2019 40 commits
  6. 18 Nov, 2019 40 commits
    • Romain Therville's avatar
      Update to make the switch_space_id work. · 7c169bce
      Romain Therville authored
      - The type ng6space has been debugged.
      - The workflow now generates a .stdout trace file.
      - The synthax has changed: python3.4
      /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchspaceid
      --project-id 1293 --space-id seqoccin --admin-login CTD
      
      issue #129
      7c169bce
  7. 04 Nov, 2019 40 commits
  8. 16 Oct, 2019 40 commits
  9. 14 Oct, 2019 40 commits
  10. 09 Oct, 2019 40 commits
  11. 08 Oct, 2019 40 commits
    • Romain Therville's avatar
      Update for issue #129 · f9366424
      Romain Therville authored
      The srcipt had to be reworked, the retention period was relative to
      "today", we wanted it relative to "the run or analysis's creation date".
      Also, a message is raised and the process is stopped if the project
      already belongs to the given space_id.
      
      issue #129
      f9366424
  12. 07 Oct, 2019 40 commits
    • Romain Therville's avatar
      New "switch_projet_space_id" workflow, update for t3MySQLdb.py. · 2e82534c
      Romain Therville authored
      The new workflow allows to migrate a project to a space_id defined in
      application.properties.
      Every run and analyse gets a new retention and new path, the directories
      and files are moved, the old directories are removed.
      
      Use:
      python3.4 /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py
      switchprojectspaceid --project-id 1292 --space-id default --admin-login
      CTD
      
      issue #129
      2e82534c
  13. 26 Sep, 2019 40 commits
  14. 06 Sep, 2019 40 commits
  15. 05 Sep, 2019 40 commits
  16. 04 Sep, 2019 40 commits
  17. 30 Aug, 2019 40 commits
    • Romain Therville's avatar
      issue#86 · dffa2ab1
      Romain Therville authored
      Instead of being deleted, special characters are replaced with '_'.
      dffa2ab1
  18. 23 Aug, 2019 40 commits
  19. 09 Aug, 2019 40 commits
  20. 08 Aug, 2019 40 commits
  21. 01 Aug, 2019 40 commits
  22. 26 Jul, 2019 40 commits
  23. 30 Apr, 2019 40 commits
  24. 15 Apr, 2019 40 commits
  25. 05 Apr, 2019 40 commits
  26. 29 Mar, 2019 40 commits
  27. 11 Feb, 2019 40 commits