Commits · f486c57911b02fde36aebbffcbdd72a64def2121 · genotoul-bioinfo / ng6

19 Oct, 2018 3 commits
- #82 : add protocol to acces server · f486c579
  Gerald Salin authored Oct 19, 2018
  
  f486c579
- #84 add BasicAnalyse.tpl · ad92bd76
  Gerald Salin authored Oct 19, 2018
  
  ad92bd76
- #82 adds protocl http/https in config to access the server · 4e59d410
  Gerald Salin authored Oct 19, 2018
  
  4e59d410
18 Oct, 2018 1 commit
- download bug with no typo3 version · 1eee80af
  Gerald Salin authored Oct 18, 2018
  
  1eee80af
16 Oct, 2018 2 commits
- Merge branch 'master' of https://forgemia.inra.fr/genotoul-bioinfo/ng6.git · f8269aea
  Gerald Salin authored Oct 16, 2018
  
  f8269aea
- reactivate insertsize · 5ab283f6
  Gerald Salin authored Oct 16, 2018
  
  5ab283f6
08 Oct, 2018 2 commits
- #56 remove rmdup component, not needed for quality control · f459dde2
  Gerald Salin authored Oct 08, 2018
  
  f459dde2
- #80 : error displaying template · de6e7c09
  Gerald Salin authored Oct 08, 2018
  
  de6e7c09
03 Oct, 2018 2 commits
- add the possibility to confgure jflow server to listen on secure port · 5ff4abd0
  gerald2545 authored Oct 03, 2018
```
(8083)
```
  5ff4abd0
- add the possibility to confgure jflow server to listen on secure port · 18121159
  gerald2545 authored Oct 03, 2018
```
(8083)
```
  18121159
02 Oct, 2018 1 commit
- make a copy instead of zcat| gzip if only one file is in the input · 97de99cf
  Gerald Salin authored Oct 02, 2018
  
  97de99cf
01 Oct, 2018 4 commits
- #79 · ba4da55f
  Gerald Salin authored Oct 01, 2018
  
  ba4da55f
- #77 : process mail demands with no records · 364483c5
  Gerald Salin authored Oct 01, 2018
```
#78 : process mail demands with delay exceeded always to No
```
  364483c5
- #76 : reaplce spluit with explode call · aab89e56
  Gerald Salin authored Oct 01, 2018
  
  aab89e56
- #75 : correct bug in purge management with new version of typo3 · 4a5039b7
  Gerald Salin authored Oct 01, 2018
  
  4a5039b7
30 Sep, 2018 1 commit
- data purge management with typo3 v8 · 6e956829
  gerald2545 authored Sep 30, 2018
  
  6e956829
28 Sep, 2018 3 commits
- Merge branch 'methylseq' into 'master' · 9d77e653
  Gerald Salin authored Sep 28, 2018
```
Methylseq

See merge request !12
```
  9d77e653
- Merge branch 'master' of https://forgemia.inra.fr/genotoul-bioinfo/ng6.git · b8ff28c8
  Audrey Gibert authored Sep 28, 2018
  
  b8ff28c8
- Fixes methylseq pipeline for single-end reads · 13164c27
  Audrey Gibert authored Aug 01, 2018
  
  13164c27
20 Sep, 2018 2 commits
- Merge branch 'nG6-Slurm' into 'master' · ff867bc4
  Gerald Salin authored Sep 20, 2018
```
Ng6 slurm

Closes #44

See merge request !11
```
  ff867bc4
- modification to not use all the CPU for the -t parameter (workers · 26ee82de
  Gerald Salin authored Sep 20, 2018
```
thread) as flash also uses i/O threads
```
  26ee82de
17 Sep, 2018 9 commits
- add logging + update jflow · 3989c196
  Gerald Salin authored Sep 17, 2018
  
  3989c196
- add a news for he latest version · a1f1b665
  Gerald Salin authored Sep 17, 2018
  
  a1f1b665
- #51 get cpu and RAM for slurm · a7a40cca
  Gerald Salin authored Sep 17, 2018
  
  a7a40cca
- update nG6 source download · 088e4e05
  Gerald Salin authored Sep 17, 2018
  
  088e4e05
- #72 · 35c45791
  Gerald Salin authored Sep 17, 2018
  
  35c45791
- add logging · b9792f29
  Gerald Salin authored Sep 17, 2018
  
  b9792f29
- #73 call gzip with its absolute path · 5c006f81
  Gerald Salin authored Sep 17, 2018
  
  5c006f81
- add concatenatefastq component in the return statement of · 58b2cef3
  Gerald Salin authored Sep 17, 2018
```
illumina_process
```
  58b2cef3
- #72 replace delete files in purge_directory · 592b26d2
  Gerald Salin authored Sep 17, 2018
  
  592b26d2
07 Sep, 2018 2 commits
- #51 · 0bfa01f5
  Gerald Salin authored Sep 07, 2018
  
  0bfa01f5
- correct bug adding self.runobj to fastqilluminafilter component · cfe987de
  Gerald Salin authored Sep 07, 2018
  
  cfe987de
06 Sep, 2018 5 commits
- logging, refactoring · 62e909d6
  Gerald Salin authored Sep 06, 2018
  
  62e909d6
- logging + add runobj argument to components to be able to access current · ecf239b6
  Gerald Salin authored Sep 06, 2018
```
run information
```
  ecf239b6
- add logging · b0cf01d8
  Gerald Salin authored Sep 06, 2018
  
  b0cf01d8
- #37 · 67ba07d9
  Gerald Salin authored Sep 06, 2018
  
  67ba07d9
- Merge branch 'nG6-Slurm' of https://forgemia.inra.fr/genotoul-bioinfo/ng6.git into nG6-Slurm · a6e392b2
  Gerald Salin authored Sep 06, 2018
  
  a6e392b2
05 Sep, 2018 3 commits
- Merge branch 'nG6-Slurm-rules' into 'nG6-Slurm' · 5ccb90b5
  Celine Noirot authored Sep 05, 2018
```
N g6 slurm rules

See merge request !10
```
  5ccb90b5
- include rules (exclude and requiredIf) in workflows · fcd072d4
  Celine Noirot authored Sep 05, 2018
  
  fcd072d4
- debug jflow · 2618d195
  Celine Noirot authored Sep 05, 2018
  
  2618d195