Commits · d25986dfb0faf4a998f29941e2ea34d58b9010d0 · genotoul-bioinfo / ng6

03 Sep, 2018 1 commit
- optimization of the addrawfiles step, aligenemnt step with · d25986df
  Gerald Salin authored Sep 03, 2018
```
subset_seqfiles
add md5sum
```
  d25986df
31 Aug, 2018 1 commit
- #68 added md5sum un run.py > archive_files · 3889cb6b
  Gerald Salin authored Aug 31, 2018
  
  3889cb6b
13 Aug, 2018 1 commit
- replace contact email and source link · 256b2ced
  Gerald Salin authored Aug 13, 2018
  
  256b2ced
10 Aug, 2018 1 commit
- Upgrade jflow v3-git · ac7efcfa
  Celine Noirot authored Aug 10, 2018
  
  ac7efcfa
09 Aug, 2018 1 commit

add print in run.py in process_raw_files to add some info in the stdout, · f5cc1b8e

Gerald Salin authored Aug 09, 2018

easier to debug
in weaver.function.py, give back the /usr/bin/env {0} line instead of
the absolute path to python, which help us to begin with migration to
slurm

f5cc1b8e

29 Oct, 2015 1 commit
- ng6 python3 · ad087c8c
  Penom Nom authored Oct 29, 2015
  
  ad087c8c
27 Mar, 2015 1 commit

The run information now requires project name instead of project id. · 8eb60afc

Penom Nom authored Mar 27, 2015

Remove --casava-project parameter from CasavaNG6Workflow, it is retrieved from samplesheet
Update fastqc component to take new metrics

8eb60afc

08 Oct, 2014 1 commit
- upgrade sample handling · 323216d4
  Penom Nom authored Oct 08, 2014
  
  323216d4
07 Oct, 2014 1 commit
- upgrade sample handling · 31b218d8
  Penom Nom authored Oct 07, 2014
  
  31b218d8
01 Oct, 2014 1 commit
- rewriting of handling parameters, workflow cleaning · b31ba169
  Penom Nom authored Oct 01, 2014
  
  b31ba169
21 Aug, 2014 1 commit
- new pipeline 'addfile' to add a file to an existing analysis or run · bbcdafa4
  Penom Nom authored Aug 21, 2014
  
  bbcdafa4
23 Jun, 2014 3 commits
- No commit message · 9333dd5d
  Jerome Mariette authored Jun 23, 2014
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  9333dd5d
- No commit message · 80a24f41
  Jerome Mariette authored Jun 23, 2014
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  80a24f41
- fix a bug when adding analysis · 46bbdfd6
  Jerome Mariette authored Jun 23, 2014
  
  46bbdfd6
08 Mar, 2014 2 commits
- fix a bug with storage_size · 0846010c
  Jerome Mariette authored Mar 08, 2014
  
  0846010c
- add storage_size field and update this one after a sync · 9a69e3bc
  Jerome Mariette authored Mar 08, 2014
  
  9a69e3bc
18 Feb, 2014 1 commit
- Add field admin login and update save function. · 5dc412aa
  Celine Noirot authored Feb 18, 2014
  
  5dc412aa
30 Jan, 2014 1 commit
- integration of Dynamic components into ng6 · 18f27f0c
  Jerome Mariette authored Jan 30, 2014
  
  18f27f0c
01 Oct, 2013 1 commit
- Fix bug with input number limitation. · 1d7c82d6
  Penom Nom authored Oct 01, 2013
  
  1d7c82d6
29 Jul, 2013 1 commit
- Add_mids_description update run in database. · cb122332
  Penom Nom authored Jul 29, 2013
  
  cb122332
26 Mar, 2013 1 commit
- No commit message · 8010a925
  Jerome Mariette authored Mar 26, 2013
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  8010a925
04 Mar, 2013 1 commit
- No commit message · bda2e506
  Jerome Mariette authored Mar 04, 2013
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  bda2e506
06 Feb, 2013 1 commit
- No commit message · 27493120
  Jerome Mariette authored Feb 06, 2013
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  27493120
25 Jan, 2013 1 commit
- imrove some classes and add run/project info to the analysis · 9aaf3fdc
  Jerome Mariette authored Jan 25, 2013
  
  9aaf3fdc
20 Dec, 2012 2 commits
- No commit message · bb66a75d
  Jerome Mariette authored Dec 20, 2012
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  bb66a75d
- change Analyse for Analysis · 3b18cafe
  Jerome Mariette authored Dec 20, 2012
  
  3b18cafe
03 Dec, 2012 1 commit
- better handle of ng6workflow · 5e5a32b5
  Jerome Mariette authored Dec 03, 2012
  
  5e5a32b5
30 Nov, 2012 1 commit
- add sfffilereader to seqio library · 49831438
  Jerome Mariette authored Nov 30, 2012
  
  49831438
28 Nov, 2012 1 commit
- add sequences stat · 9d96d282
  Jerome Mariette authored Nov 28, 2012
  
  9d96d282
27 Nov, 2012 1 commit
- add run from cmd line · 9f55ce5b
  Jerome Mariette authored Nov 27, 2012
  
  9f55ce5b
26 Nov, 2012 1 commit
- add jflow and first test to get ride of ergatis · fb81d857
  Jerome Mariette authored Nov 26, 2012
  
  fb81d857
18 Jul, 2012 1 commit
- change file rights · 188f8612
  Jerome Mariette authored Jul 18, 2012
  
  188f8612
23 May, 2012 1 commit
- make temp directory working · c776599f
  Jerome Mariette authored May 23, 2012
  
  c776599f
13 Apr, 2012 1 commit
- make ng6 compatible with python2.7 no longer with 2.6 · b2e18e0f
  Jerome Mariette authored Apr 13, 2012
  
  b2e18e0f
23 Feb, 2012 1 commit
- No commit message · 712c030d
  Penom Nom authored Feb 23, 2012
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  712c030d
08 Jul, 2011 1 commit
- make ng6run2ergatis uncompress the data · f11756e8
  Jerome Mariette authored Jul 08, 2011
  
  f11756e8
04 Jul, 2011 2 commits
- delete "delete functions" · 957c05fa
  Jerome Mariette authored Jul 04, 2011
  
  957c05fa
- improve archive2ng6 · 2fe18fe1
  Jerome Mariette authored Jul 04, 2011
  
  2fe18fe1
24 Jun, 2011 1 commit
- use smarty instead of xsl to generate the analyse view · e6793e5e
  Jerome Mariette authored Jun 24, 2011
  
  e6793e5e
31 May, 2011 1 commit
- fix bug in get_from_id · c959ac6f
  Jerome Mariette authored May 31, 2011
  
  c959ac6f