- 13 Jan, 2020 1 commit
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Romain Therville authored
The "switch_space_id" migration workflow form, in the single project view, will only be displayed to the project's administrators (right_level '2' in the 'fe_rights' database table). It stays available to superadmin users on all projects. (issue #129)
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- 10 Jan, 2020 2 commits
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Romain Therville authored
I removed two useless comments, that I left for no reason. issue #151
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Romain Therville authored
- The "size" filter criteria has been replaced by a "space" filter. - The default value is "no filter". - The result table has one more column, "Project space". -The search algorithm has been updated. WARNING : Check the issue #151 to find the SQL commands to update the views's structures. (Issue #151)
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- 07 Jan, 2020 1 commit
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Romain Therville authored
The available spaces can now be displayed and selected via a select field instead of a simple textfield. issue #151
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- 09 Dec, 2019 2 commits
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Romain Therville authored
Merge issue#129 with master See merge request !72
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Romain Therville authored
- I have removed the "local = True" parameter to execute the workflow on the computing cluster instead of ng6's host. (It was a test parameter, only meant for testing.) issue #129
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- 29 Nov, 2019 1 commit
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Celine Noirot authored
Merge branch issue#129 with master See merge request !69
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- 28 Nov, 2019 4 commits
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Romain Therville authored
Merge branch issue#119 with master See merge request !71
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Romain Therville authored
single analysis views. issue #119
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Romain Therville authored
# Conflicts: # ui/nG6/lib/class.tx_nG6_db.php
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Romain Therville authored
- New name : switch_space_id. - The given space id is checked in application.properties. - Most of the treatments have been moved to a "components" folder, allowing us to create easily a new "migrate_several_projects" (or "bulk_project_migration") later. - The workflow can be launched from the single project view on the nG6 website, when logged a superadmin user. - The project's space_id is visible to everyone on the single project view. - A warning indicating that the migration updates the retention has been added to the workflow's form in single project view. - More logs in ng6.log, and the new log file MoveProject.stdout. (path exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout) - CSS updates for the project views. - For new space_ids, the <space_id>/run and <space_id>/analyze directories will be created if missing. Issue#129
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- 21 Nov, 2019 2 commits
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Celine Noirot authored
Merge branch issue#119.2 with master See merge request !67
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Romain Therville authored
- Display fixed when the analysis or run's data state is 'extended' - New line in the analysis and run single element display, indicating the purge date when the element has been purged.
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- 19 Nov, 2019 2 commits
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Celine Noirot authored
Merge branch Issue#129 with master See merge request !66
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Romain Therville authored
- 2 useless prints removed. issue#129
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- 18 Nov, 2019 1 commit
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Romain Therville authored
- The type ng6space has been debugged. - The workflow now generates a .stdout trace file. - The synthax has changed: python3.4 /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchspaceid --project-id 1293 --space-id seqoccin --admin-login CTD issue #129
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- 13 Nov, 2019 3 commits
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Romain Therville authored
#141 change REGEX to display pictures from FASTQC analysis from new See merge request !65
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Romain Therville authored
#139 debug See merge request !63
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ckuchly authored
storage spaces
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- 12 Nov, 2019 3 commits
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Romain Therville authored
Merge branch issue#120 with master See merge request !64
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Romain Therville authored
(Refactoring only commit) issue #120
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Romain Therville authored
("/work/ng6-test/jflow_rtherville/ng6_python.log") -> has to be updated. Issue #219
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- 04 Nov, 2019 2 commits
- 28 Oct, 2019 4 commits
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Romain Therville authored
[demultiplexont.py] See merge request !62
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Romain Therville authored
Merge branch issue#126.2 with master See merge request !59
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Romain Therville authored
#134 : debug ng6workflow.py and sample.py See merge request !58
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Audrey Gibert authored
Little display correction #132
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- 25 Oct, 2019 1 commit
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Audrey Gibert authored
Logs are retrieved from the path of fastq files, and not on the working directory
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- 24 Oct, 2019 4 commits
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Audrey Gibert authored
Script was incorrect for long time processing seqkit -> Now : postprocess waits the end of job in the process part
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Romain Therville authored
merge branche issue#119 with master See merge request !61
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Romain Therville authored
issue #119
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Romain Therville authored
Merge branch issue#121 with master See merge request !60
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- 23 Oct, 2019 1 commit
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Romain Therville authored
limit. issue#119
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- 22 Oct, 2019 2 commits
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Romain Therville authored
The purge mails 'Errors-To:' field has been set to the 'email_from' value, instead of 'email_copy'. Issue#121
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Romain Therville authored
Superadmin users are now allowed to update any user (and their password), from any project. issue #126
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- 17 Oct, 2019 4 commits
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Romain Therville authored
Merge branch issue#126 with master See merge request !57
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Romain Therville authored
Merge branch issue#129 with master See merge request !56
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Romain Therville authored
I have moved the DB updates down in the code, to only register migrations that went well. issue #129
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Romain Therville authored
merge branch issue#95 with master See merge request !55
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