- 09 Jan, 2020 1 commit
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Romain Therville authored
#156 correct style See merge request !77
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- 08 Jan, 2020 6 commits
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Celine Noirot authored
Merge branch Issues#143 with master See merge request !79
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Celine Noirot authored
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Celine Noirot authored
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Celine Noirot authored
Big update for the switch_space_id workflow See merge request !80
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Romain Therville authored
#155 convert bool to int to avaoid warning See merge request !78
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Romain Therville authored
-The workflow now handles empty (no data) runs and analyzes, and more errors. -A lot of user cases have been tested. issue #129
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- 07 Jan, 2020 2 commits
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Celine Noirot authored
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Celine Noirot authored
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- 06 Jan, 2020 2 commits
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Romain Therville authored
Merge branch issue#150 with master See merge request !74
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Romain Therville authored
Merge branch issue#153 with master See merge request !75
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- 19 Dec, 2019 1 commit
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Romain Therville authored
The get_directories_structure_and_content() function has been reworked to make the projects, runs and analyzes names normalization way more consistent. This will solve the differences between sources and destinations in this function. issue #153
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- 12 Dec, 2019 1 commit
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Romain Therville authored
issue #150
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- 09 Dec, 2019 2 commits
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Romain Therville authored
Merge issue#129 with master See merge request !72
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Romain Therville authored
- I have removed the "local = True" parameter to execute the workflow on the computing cluster instead of ng6's host. (It was a test parameter, only meant for testing.) issue #129
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- 29 Nov, 2019 1 commit
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Celine Noirot authored
Merge branch issue#129 with master See merge request !69
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- 28 Nov, 2019 5 commits
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Romain Therville authored
Merge branch issue#119 with master See merge request !71
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Romain Therville authored
single analysis views. issue #119
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Romain Therville authored
# Conflicts: # ui/nG6/lib/class.tx_nG6_db.php
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Romain Therville authored
- New name : switch_space_id. - The given space id is checked in application.properties. - Most of the treatments have been moved to a "components" folder, allowing us to create easily a new "migrate_several_projects" (or "bulk_project_migration") later. - The workflow can be launched from the single project view on the nG6 website, when logged a superadmin user. - The project's space_id is visible to everyone on the single project view. - A warning indicating that the migration updates the retention has been added to the workflow's form in single project view. - More logs in ng6.log, and the new log file MoveProject.stdout. (path exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout) - CSS updates for the project views. - For new space_ids, the <space_id>/run and <space_id>/analyze directories will be created if missing. Issue#129
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ckuchly authored
FastqIlluminaFilter.
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- 21 Nov, 2019 2 commits
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Celine Noirot authored
Merge branch issue#119.2 with master See merge request !67
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Romain Therville authored
- Display fixed when the analysis or run's data state is 'extended' - New line in the analysis and run single element display, indicating the purge date when the element has been purged.
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- 19 Nov, 2019 2 commits
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Celine Noirot authored
Merge branch Issue#129 with master See merge request !66
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Romain Therville authored
- 2 useless prints removed. issue#129
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- 18 Nov, 2019 1 commit
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Romain Therville authored
- The type ng6space has been debugged. - The workflow now generates a .stdout trace file. - The synthax has changed: python3.4 /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchspaceid --project-id 1293 --space-id seqoccin --admin-login CTD issue #129
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- 15 Nov, 2019 1 commit
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ckuchly authored
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- 13 Nov, 2019 3 commits
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Romain Therville authored
#141 change REGEX to display pictures from FASTQC analysis from new See merge request !65
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Romain Therville authored
#139 debug See merge request !63
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ckuchly authored
storage spaces
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- 12 Nov, 2019 3 commits
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Romain Therville authored
Merge branch issue#120 with master See merge request !64
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Romain Therville authored
(Refactoring only commit) issue #120
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Romain Therville authored
("/work/ng6-test/jflow_rtherville/ng6_python.log") -> has to be updated. Issue #219
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- 04 Nov, 2019 2 commits
- 28 Oct, 2019 4 commits
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Romain Therville authored
[demultiplexont.py] See merge request !62
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Romain Therville authored
Merge branch issue#126.2 with master See merge request !59
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Romain Therville authored
#134 : debug ng6workflow.py and sample.py See merge request !58
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Audrey Gibert authored
Little display correction #132
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- 25 Oct, 2019 1 commit
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Audrey Gibert authored
Logs are retrieved from the path of fastq files, and not on the working directory
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