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#156 correct style

See merge request !77

Merge branch Issues#143 with master

See merge request !79

Big update for the switch_space_id workflow

See merge request !80

#155 convert bool to int to avaoid warning

See merge request !78

-The workflow now handles empty (no data) runs and analyzes, and more
errors.
-A lot of user cases have been tested.

issue #129

Merge branch issue#150 with master

See merge request !74

Merge branch issue#153 with master

See merge request !75

The get_directories_structure_and_content() function has been reworked
to make the projects, runs and analyzes names normalization way more
consistent. This will solve the differences between sources and
destinations in this function.

issue #153

issue #150

Merge issue#129 with master

See merge request !72

- I have removed the "local = True" parameter to execute the workflow on
the computing cluster instead of ng6's host.
(It was a test parameter, only meant for testing.)

issue #129

Merge branch issue#129 with master

See merge request !69

Merge branch issue#119 with master

See merge request !71

single analysis views.

issue #119

# Conflicts:
#   ui/nG6/lib/class.tx_nG6_db.php

- New name : switch_space_id.
- The given space id is checked in application.properties.
- Most of the treatments have been moved to a "components" folder,
allowing us to create easily a new "migrate_several_projects" (or
"bulk_project_migration") later.
- The workflow can be launched from the single project view on the nG6
website, when logged a superadmin user.
- The project's space_id is visible to everyone on the single project
view.
- A warning indicating that the migration updates the retention has been
added to the workflow's form in single project view.
- More logs in ng6.log, and the new log file MoveProject.stdout. (path
exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout)
- CSS updates for the project views.
- For new space_ids, the <space_id>/run and <space_id>/analyze
directories will be created if missing.


Issue#129

FastqIlluminaFilter.

Merge branch issue#119.2 with master

See merge request !67

- Display fixed when the analysis or run's data state is 'extended'
- New line in the analysis and run single element display, indicating
the purge date when the element has been purged.

Merge branch Issue#129 with master

See merge request !66

- 2 useless prints removed.

issue#129

- The type ng6space has been debugged.
- The workflow now generates a .stdout trace file.
- The synthax has changed: python3.4
/save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchspaceid
--project-id 1293 --space-id seqoccin --admin-login CTD

issue #129

#141 change REGEX to display pictures from FASTQC analysis from new

See merge request !65

#139 debug

See merge request !63

storage spaces

Merge branch issue#120 with master

See merge request !64

(Refactoring only commit)

issue #120

("/work/ng6-test/jflow_rtherville/ng6_python.log") -> has to be updated.


Issue  #219

[demultiplexont.py]

See merge request !62

Merge branch issue#126.2 with master

See merge request !59

#134 : debug ng6workflow.py and sample.py

See merge request !58

Little display correction #132

Logs are retrieved from the path of fastq files, and not on the working
directory