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    • Celine Noirot's avatar
      DEbug : · 5fc4281b
      Celine Noirot authored 
      - mv after bismark_extraction
- processing step
- option of rmdup (-s for single and not for paired)
      5fc4281b
  15. 11 Feb, 2016 1 commit
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    • Penom Nom's avatar
      update dowload components to properly clos filehandlers. Update CASAVANG6WF... · d6eaacde
      Penom Nom authored 
      update dowload components to properly clos filehandlers. Update CASAVANG6WF class to add a funtion that will run all casava specific process (illumina filter, demultiplexstat etc...) This makes the code cleaner for all casavang6workflows. This class has also been updated to be able to use --sample option.
      d6eaacde
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