Maintenance - Mise à jour mensuelle Lundi 1 Juin 2020 entre 7h00 et 9h00

  1. 15 Jan, 2020 40 commits
    • Romain Therville's avatar
      Fix for tx_nG6_eid.php · 52ac101a
      Romain Therville authored
      I don't see any difference yet, but the master version of this file
      return no result table, and this version does.
      
      I might revert this commit if it is useless.
      
      issue #151, for the new tag V3.2.5.3
      52ac101a
    • Romain Therville's avatar
      2nd fix for nG6_utils.php · e2661161
      Romain Therville authored
      2 functions were missing from my version of this file, get_save_dir()
      and get_project_data_save_dir().
      e2661161
    • Romain Therville's avatar
      Fix for the issue #151 · 26b00dfc
      Romain Therville authored
      A function was missing from the last commit + merge,
      get_available_space_ids() from tx.nG6_utils.php.
      
      issue #151
      26b00dfc
  2. 14 Jan, 2020 40 commits
    • Romain Therville's avatar
      Update for issue #151 · d6928bee
      Romain Therville authored
      Same branch as the old issue151, and same commit as
      c5f5c618 .
      I have deleted the branch and commits earlier this week, I thought the
      merge was already done.
      
      Also, this time I pushed the (much needed) updated ng6_database.sql
      file.
      
      (Once again, when this update goes live, an update to the DB structure
      will be needed. See the related issue.)
      
      Issue #151
      d6928bee
  3. 13 Jan, 2020 40 commits
    • Romain Therville's avatar
      Update to the single project view page · 80d1d407
      Romain Therville authored
      The "switch_space_id" migration workflow form, in the single project
      view, will only be displayed to the project's administrators
      (right_level '2' in the 'fe_rights' database table).
      
      It stays available to superadmin users on all projects.
      
      (issue #129)
      80d1d407
  4. 10 Jan, 2020 40 commits
  5. 07 Jan, 2020 40 commits
  6. 09 Dec, 2019 40 commits
  7. 29 Nov, 2019 40 commits
  8. 28 Nov, 2019 40 commits
    • Romain Therville's avatar
      Merge branch 'issue#119' into 'master' · faf99524
      Romain Therville authored
      Merge branch issue#119 with master
      
      See merge request !71
      faf99524
    • Romain Therville's avatar
      Minor visual update for the retention display in the single run and · f2d1c194
      Romain Therville authored
      single analysis views.
      
      issue #119
      f2d1c194
    • Romain Therville's avatar
      Merge branch 'master' into 'issue#129' · aafa1f11
      Romain Therville authored
      # Conflicts:
      #   ui/nG6/lib/class.tx_nG6_db.php
      aafa1f11
    • Romain Therville's avatar
      Huge update for the new migration workflow: · db1b75b8
      Romain Therville authored
      - New name : switch_space_id.
      - The given space id is checked in application.properties.
      - Most of the treatments have been moved to a "components" folder,
      allowing us to create easily a new "migrate_several_projects" (or
      "bulk_project_migration") later.
      - The workflow can be launched from the single project view on the nG6
      website, when logged a superadmin user.
      - The project's space_id is visible to everyone on the single project
      view.
      - A warning indicating that the migration updates the retention has been
      added to the workflow's form in single project view.
      - More logs in ng6.log, and the new log file MoveProject.stdout. (path
      exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout)
      - CSS updates for the project views.
      - For new space_ids, the <space_id>/run and <space_id>/analyze
      directories will be created if missing.
      
      
      Issue#129
      db1b75b8
  9. 21 Nov, 2019 40 commits
    • Celine Noirot's avatar
      Merge branch 'issue#119.2' into 'master' · 2a4a90d8
      Celine Noirot authored
      Merge branch issue#119.2 with master
      
      See merge request !67
      2a4a90d8
    • Romain Therville's avatar
      issue#119 · 171f25f0
      Romain Therville authored
      - Display fixed when the analysis or run's data state is 'extended'
      - New line in the analysis and run single element display, indicating
      the purge date when the element has been purged.
      171f25f0
  10. 19 Nov, 2019 40 commits
  11. 18 Nov, 2019 40 commits
    • Romain Therville's avatar
      Update to make the switch_space_id work. · 7c169bce
      Romain Therville authored
      - The type ng6space has been debugged.
      - The workflow now generates a .stdout trace file.
      - The synthax has changed: python3.4
      /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchspaceid
      --project-id 1293 --space-id seqoccin --admin-login CTD
      
      issue #129
      7c169bce
  12. 13 Nov, 2019 40 commits
  13. 12 Nov, 2019 40 commits
  14. 04 Nov, 2019 40 commits
  15. 28 Oct, 2019 40 commits
  16. 25 Oct, 2019 40 commits
    • Audrey Gibert's avatar
      [ont_qc>__init__] · eaeee36f
      Audrey Gibert authored
      Logs are retrieved from the path of fastq files, and not on the working
      directory
      eaeee36f
  17. 24 Oct, 2019 40 commits
  18. 23 Oct, 2019 40 commits
  19. 22 Oct, 2019 40 commits