- 14 Jan, 2020 4 commits
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Celine Noirot authored
Merge branch Issue#129 with master See merge request !83
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Romain Therville authored
# Conflicts: # ui/nG6/lib/class.tx_nG6_utils.php (Both lines looked the same to me. RT)
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Romain Therville authored
"The user you entered doesn't have the rights to perform[...]" issue #129
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Romain Therville authored
Before launching a project space migration (from the new form in the single project view), we ask for a user+ pwd and run the following test: We use the given user+pwd to run a "touch+rm" in the current project's space's data directory. In production, only ng6, root and users in the apache group can perform this action. (So only people with access to those credentials will be able tu run the switch_space_id workflow from there) More infos in the issue. Issue #129
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- 13 Jan, 2020 1 commit
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Romain Therville authored
The 'switch_space_id' migration workflow is now displayed for the current project's administrator users. (table fe_rights, right_level = 2) Superadmin users can still launch the migration of any project. (issue #129)
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- 09 Jan, 2020 1 commit
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Romain Therville authored
#156 correct style See merge request !77
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- 08 Jan, 2020 7 commits
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Celine Noirot authored
Merge branch Issues#143 with master See merge request !79
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Celine Noirot authored
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Celine Noirot authored
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Celine Noirot authored
Big update for the switch_space_id workflow See merge request !80
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Romain Therville authored
#155 convert bool to int to avaoid warning See merge request !78
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Romain Therville authored
-The workflow now handles empty (no data) runs and analyzes, and more errors. -A lot of user cases have been tested. issue #129
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Romain Therville authored
-New better logs, in MoveProject.stdout and (if the workflow fails) in ng6.log -The workflow now handles empty analyzes and runs. -A lot of user cases have been tested. issue #129
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- 07 Jan, 2020 2 commits
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Celine Noirot authored
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Celine Noirot authored
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- 06 Jan, 2020 2 commits
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Romain Therville authored
Merge branch issue#150 with master See merge request !74
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Romain Therville authored
Merge branch issue#153 with master See merge request !75
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- 19 Dec, 2019 1 commit
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Romain Therville authored
The get_directories_structure_and_content() function has been reworked to make the projects, runs and analyzes names normalization way more consistent. This will solve the differences between sources and destinations in this function. issue #153
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- 12 Dec, 2019 1 commit
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Romain Therville authored
issue #150
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- 09 Dec, 2019 2 commits
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Romain Therville authored
Merge issue#129 with master See merge request !72
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Romain Therville authored
- I have removed the "local = True" parameter to execute the workflow on the computing cluster instead of ng6's host. (It was a test parameter, only meant for testing.) issue #129
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- 29 Nov, 2019 1 commit
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Celine Noirot authored
Merge branch issue#129 with master See merge request !69
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- 28 Nov, 2019 5 commits
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Romain Therville authored
Merge branch issue#119 with master See merge request !71
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Romain Therville authored
single analysis views. issue #119
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Romain Therville authored
# Conflicts: # ui/nG6/lib/class.tx_nG6_db.php
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Romain Therville authored
- New name : switch_space_id. - The given space id is checked in application.properties. - Most of the treatments have been moved to a "components" folder, allowing us to create easily a new "migrate_several_projects" (or "bulk_project_migration") later. - The workflow can be launched from the single project view on the nG6 website, when logged a superadmin user. - The project's space_id is visible to everyone on the single project view. - A warning indicating that the migration updates the retention has been added to the workflow's form in single project view. - More logs in ng6.log, and the new log file MoveProject.stdout. (path exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout) - CSS updates for the project views. - For new space_ids, the <space_id>/run and <space_id>/analyze directories will be created if missing. Issue#129
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ckuchly authored
FastqIlluminaFilter.
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- 21 Nov, 2019 2 commits
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Celine Noirot authored
Merge branch issue#119.2 with master See merge request !67
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Romain Therville authored
- Display fixed when the analysis or run's data state is 'extended' - New line in the analysis and run single element display, indicating the purge date when the element has been purged.
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- 19 Nov, 2019 2 commits
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Celine Noirot authored
Merge branch Issue#129 with master See merge request !66
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Romain Therville authored
- 2 useless prints removed. issue#129
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- 18 Nov, 2019 1 commit
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Romain Therville authored
- The type ng6space has been debugged. - The workflow now generates a .stdout trace file. - The synthax has changed: python3.4 /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchspaceid --project-id 1293 --space-id seqoccin --admin-login CTD issue #129
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- 15 Nov, 2019 1 commit
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ckuchly authored
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- 13 Nov, 2019 3 commits
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Romain Therville authored
#141 change REGEX to display pictures from FASTQC analysis from new See merge request !65
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Romain Therville authored
#139 debug See merge request !63
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ckuchly authored
storage spaces
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- 12 Nov, 2019 3 commits
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Romain Therville authored
Merge branch issue#120 with master See merge request !64
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Romain Therville authored
(Refactoring only commit) issue #120
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Romain Therville authored
("/work/ng6-test/jflow_rtherville/ng6_python.log") -> has to be updated. Issue #219
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- 04 Nov, 2019 1 commit
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ckuchly authored
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