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Merge branch Issue#129 with master

See merge request !83

# Conflicts:
#   ui/nG6/lib/class.tx_nG6_utils.php

(Both lines looked the same to me. RT)

"The user you entered doesn't have the rights to perform[...]"

issue #129

Before launching a project space migration (from the new form in the
single project view), we ask for a user+ pwd and run the following test:
We use the given user+pwd to run a "touch+rm" in the current project's
space's data directory. In production, only ng6, root and users in the
apache group can perform this action.
(So only people with access to those credentials will be able tu run the
switch_space_id workflow from there)

More infos in the issue.

Issue #129

The 'switch_space_id' migration workflow is now displayed for the
current project's administrator users.
(table fe_rights, right_level = 2)

Superadmin users can still launch the migration of any project.

(issue #129)

#156 correct style

See merge request !77

Merge branch Issues#143 with master

See merge request !79

Big update for the switch_space_id workflow

See merge request !80

#155 convert bool to int to avaoid warning

See merge request !78

-The workflow now handles empty (no data) runs and analyzes, and more
errors.
-A lot of user cases have been tested.

issue #129

-New better logs, in MoveProject.stdout and (if the workflow fails) in
ng6.log
-The workflow now handles empty analyzes and runs.
-A lot of user cases have been tested.

issue #129

Merge branch issue#150 with master

See merge request !74

Merge branch issue#153 with master

See merge request !75

The get_directories_structure_and_content() function has been reworked
to make the projects, runs and analyzes names normalization way more
consistent. This will solve the differences between sources and
destinations in this function.

issue #153

issue #150

Merge issue#129 with master

See merge request !72

- I have removed the "local = True" parameter to execute the workflow on
the computing cluster instead of ng6's host.
(It was a test parameter, only meant for testing.)

issue #129

Merge branch issue#129 with master

See merge request !69

Merge branch issue#119 with master

See merge request !71

single analysis views.

issue #119

# Conflicts:
#   ui/nG6/lib/class.tx_nG6_db.php

- New name : switch_space_id.
- The given space id is checked in application.properties.
- Most of the treatments have been moved to a "components" folder,
allowing us to create easily a new "migrate_several_projects" (or
"bulk_project_migration") later.
- The workflow can be launched from the single project view on the nG6
website, when logged a superadmin user.
- The project's space_id is visible to everyone on the single project
view.
- A warning indicating that the migration updates the retention has been
added to the workflow's form in single project view.
- More logs in ng6.log, and the new log file MoveProject.stdout. (path
exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout)
- CSS updates for the project views.
- For new space_ids, the <space_id>/run and <space_id>/analyze
directories will be created if missing.


Issue#129

FastqIlluminaFilter.

Merge branch issue#119.2 with master

See merge request !67

- Display fixed when the analysis or run's data state is 'extended'
- New line in the analysis and run single element display, indicating
the purge date when the element has been purged.

Merge branch Issue#129 with master

See merge request !66

- 2 useless prints removed.

issue#129

- The type ng6space has been debugged.
- The workflow now generates a .stdout trace file.
- The synthax has changed: python3.4
/save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchspaceid
--project-id 1293 --space-id seqoccin --admin-login CTD

issue #129

#141 change REGEX to display pictures from FASTQC analysis from new

See merge request !65

#139 debug

See merge request !63

storage spaces

Merge branch issue#120 with master

See merge request !64

(Refactoring only commit)

issue #120

("/work/ng6-test/jflow_rtherville/ng6_python.log") -> has to be updated.


Issue  #219