Commits · 3d88cb2beed32541eb0573fe8787375deb5ec7ee · genotoul-bioinfo / ng6

08 Jan, 2020 2 commits

Big update for the switch_space_id workflow · e792d387

Romain Therville authored Jan 08, 2020

-The workflow now handles empty (no data) runs and analyzes, and more
errors.
-A lot of user cases have been tested.

issue #129

e792d387

Big update for the switch_space_id workflow · 1dc8afbe

Romain Therville authored Jan 08, 2020

-New better logs, in MoveProject.stdout and (if the workflow fails) in
ng6.log
-The workflow now handles empty analyzes and runs.
-A lot of user cases have been tested.

issue #129

1dc8afbe

19 Dec, 2019 1 commit

Utils.py update · edcc9cc2

Romain Therville authored Dec 19, 2019

The get_directories_structure_and_content() function has been reworked
to make the projects, runs and analyzes names normalization way more
consistent. This will solve the differences between sources and
destinations in this function.

issue #153

edcc9cc2

28 Nov, 2019 1 commit
- #143 : modified files who is analysed by fastqc, contaminationSearch and · 9b9e0e65
  ckuchly authored Nov 28, 2019
```
FastqIlluminaFilter.
```
  9b9e0e65
18 Nov, 2019 1 commit

Update to make the switch_space_id work. · 7c169bce

Romain Therville authored Nov 18, 2019

- The type ng6space has been debugged.
- The workflow now generates a .stdout trace file.
- The synthax has changed: python3.4
/save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchspaceid
--project-id 1293 --space-id seqoccin --admin-login CTD

issue #129

7c169bce

26 Sep, 2019 1 commit
- ng6/utils.py has been updated to allow '0' in run names when the · 9f5fca59
  Romain Therville authored Sep 26, 2019
```
workflow 'downloadsymlink' is called.
(They were replaced with '_'.)

issue#86 reopened
```
  9f5fca59
04 Sep, 2019 1 commit
- last modification for 10X pipeline · cba79771
  ckuchly authored Sep 04, 2019
  
  cba79771
30 Aug, 2019 1 commit

issue#86 · dffa2ab1

Romain Therville authored Aug 30, 2019

Instead of being deleted, special characters are replaced with '_'.

dffa2ab1

23 Aug, 2019 2 commits
- The run's name is not set with a regex, allowing only alphanumeric · e2ecc6b1
  Romain Therville authored Aug 23, 2019
```
characters.
```
  e2ecc6b1
- Fix for issue#86 · ac7c5ff7
  Romain Therville authored Aug 23, 2019
  
  ac7c5ff7
30 Jan, 2019 1 commit
- Change path to scripts R · 653760d4
  mmanno authored Jan 30, 2019
  
  653760d4
07 Sep, 2018 1 commit
- correct bug adding self.runobj to fastqilluminafilter component · cfe987de
  Gerald Salin authored Sep 07, 2018
  
  cfe987de
06 Sep, 2018 1 commit
- logging, refactoring · 62e909d6
  Gerald Salin authored Sep 06, 2018
  
  62e909d6
13 Aug, 2018 1 commit
- replace contact email and source link · 256b2ced
  Gerald Salin authored Aug 13, 2018
  
  256b2ced
13 Sep, 2017 1 commit
- create purgedemand workflow to encode password in ajax request · 1c51484c
  Celine Noirot authored Sep 13, 2017
  
  1c51484c
13 Nov, 2015 1 commit
- fix download · aad58bf9
  Penom Nom authored Nov 13, 2015
  
  aad58bf9
29 Oct, 2015 1 commit
- ng6 python3 · ad087c8c
  Penom Nom authored Oct 29, 2015
  
  ad087c8c
13 Aug, 2015 1 commit
- No commit message · 3e42c4d6
  Penom Nom authored Aug 13, 2015
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No commit message
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  3e42c4d6
02 Jul, 2015 1 commit
- update download to encrypt password · 3647fe03
  Penom Nom authored Jul 02, 2015
  
  3647fe03
07 Oct, 2014 1 commit
- upgrade sample handling · 31b218d8
  Penom Nom authored Oct 07, 2014
  
  31b218d8
08 Mar, 2014 1 commit
- add storage_size field and update this one after a sync · 9a69e3bc
  Jerome Mariette authored Mar 08, 2014
  
  9a69e3bc
23 Jan, 2014 1 commit
- Move the method 'get_argument_pattern' to jflow.utils. · a046d258
  Penom Nom authored Jan 23, 2014
  
  a046d258
04 Dec, 2013 1 commit
- filesFromCasava returns sorted list. · 4ab06d01
  Penom Nom authored Dec 04, 2013
  
  4ab06d01
21 Oct, 2013 2 commits
- Add demultiplex_stat analysis. · 70eee3dc
  Penom Nom authored Oct 21, 2013
  
  70eee3dc
- Add demultiplex_stat analysis. · 8755d3ca
  Penom Nom authored Oct 21, 2013
  
  8755d3ca
10 Jul, 2013 2 commits
- Add details on error message. · 47628cc4
  Penom Nom authored Jul 10, 2013
  
  47628cc4
- Merge CASAVA and Illumina pipelines (part 1). · 1c19a659
  Penom Nom authored Jul 10, 2013
  
  1c19a659
24 Apr, 2013 1 commit
- Add Flash analyse. · a460e703
  Penom Nom authored Apr 24, 2013
  
  a460e703
04 Apr, 2013 1 commit
- Fix bug with large dataset (bash argument syntax). · 7354e85e
  Penom Nom authored Apr 04, 2013
  
  7354e85e
03 Apr, 2013 1 commit
- No commit message · 7ce6a47b
  Penom Nom authored Apr 03, 2013
```
No commit message
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  7ce6a47b
27 Mar, 2013 2 commits
- Add ConcatenateFilesGroups · 41e4ca90
  Penom Nom authored Mar 27, 2013
  
  41e4ca90
- Use split_pair and basename prefix · 48d51111
  Penom Nom authored Mar 27, 2013
  
  48d51111
06 Feb, 2013 1 commit
- No commit message · 27493120
  Jerome Mariette authored Feb 06, 2013
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No commit message
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  27493120
27 Nov, 2012 1 commit
- add run from cmd line · 9f55ce5b
  Jerome Mariette authored Nov 27, 2012
  
  9f55ce5b
26 Nov, 2012 1 commit
- add jflow and first test to get ride of ergatis · fb81d857
  Jerome Mariette authored Nov 26, 2012
  
  fb81d857
12 Nov, 2011 1 commit
- No commit message · 5b6cc903
  Jerome Mariette authored Nov 12, 2011
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No commit message
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  5b6cc903
04 Aug, 2011 1 commit
- handle tar archive when getting files from ng6 · 0fcc024f
  Jerome Mariette authored Aug 04, 2011
  
  0fcc024f
08 Jul, 2011 1 commit
- make ng6run2ergatis uncompress the data · f11756e8
  Jerome Mariette authored Jul 08, 2011
  
  f11756e8
04 Jul, 2011 1 commit
- improve archive2ng6 · 2fe18fe1
  Jerome Mariette authored Jul 04, 2011
  
  2fe18fe1
16 May, 2011 1 commit
- take care in install procedure if ng6.cfg already exists + delete unused function · ce1bb94b
  Jerome Mariette authored May 16, 2011
  
  ce1bb94b