- 09 Dec, 2019 1 commit
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Romain Therville authored
- I have removed the "local = True" parameter to execute the workflow on the computing cluster instead of ng6's host. (It was a test parameter, only meant for testing.) issue #129
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- 28 Nov, 2019 1 commit
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Romain Therville authored
- New name : switch_space_id. - The given space id is checked in application.properties. - Most of the treatments have been moved to a "components" folder, allowing us to create easily a new "migrate_several_projects" (or "bulk_project_migration") later. - The workflow can be launched from the single project view on the nG6 website, when logged a superadmin user. - The project's space_id is visible to everyone on the single project view. - A warning indicating that the migration updates the retention has been added to the workflow's form in single project view. - More logs in ng6.log, and the new log file MoveProject.stdout. (path exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout) - CSS updates for the project views. - For new space_ids, the <space_id>/run and <space_id>/analyze directories will be created if missing. Issue#129
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- 19 Nov, 2019 1 commit
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Romain Therville authored
- 2 useless prints removed. issue#129
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- 18 Nov, 2019 1 commit
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Romain Therville authored
- The type ng6space has been debugged. - The workflow now generates a .stdout trace file. - The synthax has changed: python3.4 /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchspaceid --project-id 1293 --space-id seqoccin --admin-login CTD issue #129
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- 12 Nov, 2019 1 commit
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Romain Therville authored
("/work/ng6-test/jflow_rtherville/ng6_python.log") -> has to be updated. Issue #219
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- 28 Oct, 2019 4 commits
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Romain Therville authored
[demultiplexont.py] See merge request !62
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Romain Therville authored
Merge branch issue#126.2 with master See merge request !59
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Romain Therville authored
#134 : debug ng6workflow.py and sample.py See merge request !58
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Audrey Gibert authored
Little display correction #132
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- 25 Oct, 2019 1 commit
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Audrey Gibert authored
Logs are retrieved from the path of fastq files, and not on the working directory
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- 24 Oct, 2019 4 commits
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Audrey Gibert authored
Script was incorrect for long time processing seqkit -> Now : postprocess waits the end of job in the process part
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Romain Therville authored
merge branche issue#119 with master See merge request !61
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Romain Therville authored
issue #119
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Romain Therville authored
Merge branch issue#121 with master See merge request !60
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- 23 Oct, 2019 1 commit
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Romain Therville authored
limit. issue#119
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- 22 Oct, 2019 2 commits
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Romain Therville authored
The purge mails 'Errors-To:' field has been set to the 'email_from' value, instead of 'email_copy'. Issue#121
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Romain Therville authored
Superadmin users are now allowed to update any user (and their password), from any project. issue #126
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- 17 Oct, 2019 6 commits
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Romain Therville authored
Merge branch issue#126 with master See merge request !57
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Romain Therville authored
Merge branch issue#129 with master See merge request !56
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Romain Therville authored
I have moved the DB updates down in the code, to only register migrations that went well. issue #129
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Romain Therville authored
merge branch issue#95 with master See merge request !55
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Romain Therville authored
merge branch issue#129 with master See merge request !54
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Romain Therville authored
Merge branch issue#120 with master See merge request !53
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- 16 Oct, 2019 3 commits
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Romain Therville authored
The displayed date (when the retention is a fixed date) was wrong. Issue #120
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Romain Therville authored
The workflow has been re-writed to put most of the BD treatments in the corresponding classes (Run, Analysis, Project). issue#129
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Romain Therville authored
Resolves the addanalysis bug issue#95, issue#85
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- 14 Oct, 2019 4 commits
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ckuchly authored
index files in casava directory who isn't 10X data.
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Romain Therville authored
Issue#129 See merge request !52
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Romain Therville authored
I removed a few logging calls that a used for debugging.
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Romain Therville authored
issue #129 There was a problem with file's paths. Fixed.
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- 10 Oct, 2019 3 commits
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Romain Therville authored
Ng6 slurm 10 x See merge request !50
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Romain Therville authored
Issue#120 See merge request !51
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Maxime Manno authored
N g6 ont demultiplex See merge request !48
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- 09 Oct, 2019 4 commits
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Romain Therville authored
# Conflicts: # ui/nG6/pi6/class.tx_nG6_pi6.php The conflict only concerned php comments. I would have prefered to remove them, but the resulting script seemed really fishy on the git file compare display. Anyway, we'll be able to remove those comments later.
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Romain Therville authored
Issue#129 See merge request !49
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Romain Therville authored
issue #120
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ckuchly authored
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- 08 Oct, 2019 1 commit
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Romain Therville authored
The srcipt had to be reworked, the retention period was relative to "today", we wanted it relative to "the run or analysis's creation date". Also, a message is raised and the process is stopped if the project already belongs to the given space_id. issue #129
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- 07 Oct, 2019 1 commit
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Romain Therville authored
The new workflow allows to migrate a project to a space_id defined in application.properties. Every run and analyse gets a new retention and new path, the directories and files are moved, the old directories are removed. Use: python3.4 /save/ng6-test/src/ng6-git-rtherville/bin/ng6_cli.py switchprojectspaceid --project-id 1292 --space-id default --admin-login CTD issue #129
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- 27 Sep, 2019 1 commit
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Romain Therville authored
Merge branch Issue#127 with master See merge request !45
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