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Commit f982c9b4 authored by Penom Nom's avatar Penom Nom
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Update to bootstrap 3

parent dc08c829
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Showing with 32666 additions and 2971 deletions
ui/felogin.html
View file @ f982c9b4
......@@ -48,49 +48,50 @@
<!--###TEMPLATE_LOGIN###-->
<div class="sub-content sc-top-bottom">
<div class="ng6-content-header-left">
<h2>###STATUS_HEADER###</h2>
<p>###STATUS_MESSAGE###</p>
<!-- ###LOGIN_FORM### -->
<form action="###ACTION_URI###" target="_top" method="post" onsubmit="###ON_SUBMIT###" class="form-horizontal">
<fieldset>
<legend>###LEGEND###</legend>
<div class="control-group">
<label class="control-label" for="user">###USERNAME_LABEL###</label>
<div class="controls">
<input type="text" class="input-small" id="user" name="user" placeholder="User name">
</div>
</div>
<div class="control-group">
<label class="control-label" for="pass">###PASSWORD_LABEL###</label>
<div class="controls">
<input type="password" class="input-small" id="pass" name="pass" placeholder="Password">
</div>
</div>
<!--###PERMALOGIN_VALID###-->
<div>
<label for="permalogin">###PERMALOGIN###</label>
<input name="permalogin" value="0" type="hidden" ###PERMALOGIN_HIDDENFIELD_ATTRIBUTES### id="permaloginHiddenField" />
<input name="permalogin" value="1" type="checkbox" ###PERMALOGIN_CHECKBOX_ATTRIBUTES### id="permalogin" onclick="document.getElementById('permaloginHiddenField').disabled = this.checked;" />
</div>
<!--###PERMALOGIN_VALID###-->
<legend>###LEGEND###</legend>
<div class="form-group">
<label class="col-sm-offset-1 col-sm-4 control-label" for="user">###USERNAME_LABEL###</label>
<div class="col-sm-6">
<input type="text" class="input-sm form-control" id="user" name="user" placeholder="User name">
</div>
</div>
<div class="form-group">
<label class="col-sm-offset-1 col-sm-4 control-label" for="pass">###PASSWORD_LABEL###</label>
<div class="col-sm-6">
<input type="password" class="input-sm form-control" id="pass" name="pass" placeholder="Password">
</div>
</div>
<div class="control-group">
<div class="controls">
<input type="submit" name="submit" class="btn" value="###LOGIN_LABEL###" />
</div>
</div>
<!--###PERMALOGIN_VALID###-->
<div>
<label for="permalogin">###PERMALOGIN###</label>
<input name="permalogin" value="0" type="hidden" ###PERMALOGIN_HIDDENFIELD_ATTRIBUTES### id="permaloginHiddenField" />
<input name="permalogin" value="1" type="checkbox" ###PERMALOGIN_CHECKBOX_ATTRIBUTES### id="permalogin" onclick="document.getElementById('permaloginHiddenField').disabled = this.checked;" />
</div>
<!--###PERMALOGIN_VALID###-->
<div class="form-group">
<div class="col-sm-offset-5 col-sm-6">
<input type="submit" name="submit" class="btn btn-default" value="###LOGIN_LABEL###" />
</div>
</div>
<div class="felogin-hidden">
<input type="hidden" name="logintype" value="login" />
<input type="hidden" name="pid" value="###STORAGE_PID###" />
<input type="hidden" name="redirect_url" value="###REDIRECT_URL###" />
<input type="hidden" name="###PREFIXID###[noredirect]" value="###NOREDIRECT###" />
###EXTRA_HIDDEN###
</div>
<div class="felogin-hidden">
<input type="hidden" name="logintype" value="login" />
<input type="hidden" name="pid" value="###STORAGE_PID###" />
<input type="hidden" name="redirect_url" value="###REDIRECT_URL###" />
<input type="hidden" name="###PREFIXID###[noredirect]" value="###NOREDIRECT###" />
###EXTRA_HIDDEN###
</div>
</fieldset>
</form>
</div>
......@@ -108,7 +109,7 @@
<dt>August 2nd 2011</dt> <dd> New functionalities are available to browse your projects/runs/analyses. A hierarchical display is now available for analysis. For project administrators new functionalities are also available.</dd>
</dl>
</div>
<div style="clear:both"></div>
</div>
......@@ -133,17 +134,17 @@
<form action="###ACTION_URI###" target="_top" method="post" onsubmit="###ON_SUBMIT###" class="form-horizontal">
<fieldset>
<legend>###LEGEND###</legend>
<div class="control-group">
<label class="control-label" for="user">###USERNAME_LABEL###</label>
<div class="controls">
<input type="text" class="input-small" value="###USERNAME###" disabled>
<div class="form-group">
<label class="col-sm-offset-1 col-sm-4 control-label" for="user">###USERNAME_LABEL###</label>
<div class="col-sm-6">
<input type="text" class="input-sm form-control" value="###USERNAME###" disabled>
</div>
</div>
<div class="control-group">
<div class="controls">
<input type="submit" name="submit" class="btn" value="###LOGOUT_LABEL###" />
<div class="form-group">
<div class="col-sm-offset-5 col-sm-6">
<input type="submit" name="submit" class="btn btn-default" value="###LOGOUT_LABEL###" />
</div>
</div>
<div class="felogin-hidden">
......@@ -256,4 +257,5 @@
###BACKLINK_LOGIN###
<!--###TEMPLATE_CHANGEPASSWORD###-->
</body>
</html>
ui/nG6/lib/class.tx_nG6_db.php
View file @ f982c9b4
......@@ -1842,8 +1842,20 @@ class tx_nG6_db {
function is_ng6_administrator($user_id){
$is_ng6_admin = false;
if( $user_id != null){
$user_group = tx_nG6_db::get_user_usergroup($user_id);
$groups = explode ( ',', $user_group) ;
$usergroup = null;
$queryParts = Array(
'SELECT' => 'fe_users.usergroup',
'FROM' => 'fe_users',
'WHERE' => 'fe_users.uid='.$user_id,
'GROUPBY' => '',
'ORDERBY' => '',
'LIMIT' => '',
);
$res = $GLOBALS['TYPO3_DB']->exec_SELECT_queryArray($queryParts);
while($res_row = $GLOBALS['TYPO3_DB']->sql_fetch_assoc($res)) {
$usergroup = $res_row['usergroup'];
}
$groups = explode ( ',', $usergroup) ;
if (in_array('1', $groups)){
$is_ng6_admin = true;
}
......
ui/nG6/pi1/analysis_table.tpl
View file @ f982c9b4
......@@ -18,8 +18,10 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<table class="table table-striped table-bordered dataTable" id="analysis_data_table">
<thead>
<tr>
{assign var="acolspan" value=5}
{if $is_admin && $login_user && $display_analysis_result}
<th><center><input type="checkbox" id="chk_all_analysis"></center></th>
<th><center><input type="checkbox" id="chk_all_analysis"></center></th>
{assign var="acolspan" value= $acolspan +1 }
{/if}
<th nowrap>Name</th>
<th>Description</th>
......@@ -34,18 +36,18 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{if $is_admin}
<tfoot>
<tr>
<th align="left" colspan="6">
<th align="left" colspan="{$acolspan}">
With selection :
<div class="btn-group">
<button id="hide_analysis" type="button" class="btn multiplea-selection-btn btn-small"><i class=" icon-eye-close"></i> hide</button>
<button id="unhide_analysis" type="button" class="btn multiplea-selection-btn btn-small"><i class="icon-eye-open"></i> unhide</button>
<button id="hide_analysis" type="button" class="btn multiplea-selection-btn btn-sm btn-default"><i class="glyphicon glyphicon-eye-close"></i> hide</button>
<button id="unhide_analysis" type="button" class="btn multiplea-selection-btn btn-sm btn-default"><i class="glyphicon glyphicon-eye-open"></i> unhide</button>
</div>
<div class="btn-group">
<button id="add_analysis" type="button" class="btn noa-selection-btn btn-small"><i class="icon-plus"></i> add</button>
<button id="delete_analysis" type="button" class="btn multiplea-selection-btn btn-small"><i class="icon-minus"></i> delete</button>
<button id="add_analysis" type="button" class="btn noa-selection-btn btn-sm btn-default"><i class="glyphicon glyphicon-plus"></i> add</button>
<button id="delete_analysis" type="button" class="btn multiplea-selection-btn btn-sm btn-default"><i class="glyphicon glyphicon-minus"></i> delete</button>
</div>
</th>
</tr>
</tfoot>
{/if}
</table>
\ No newline at end of file
</table>
ui/nG6/pi1/analyzes/AnalysisTemplate.tpl
View file @ f982c9b4
......@@ -21,6 +21,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<input type="hidden" id="server_url" value="{$server_url}" />
<input type="hidden" id="user_login" value="{$user_login}" />
<input type="hidden" id="user_id" value="{$user_id}" />
<input type="hidden" id="user_email" value="{$user_email}" />
<div class="sub-content sc-top">
{block name=description}
......@@ -138,40 +139,4 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{/block}
</div>
{* Modal initialization *}
{* Global tmpl *}
<div id="ng6modal" class="modal hide fade" tabindex="-1" role="dialog" aria-labelledby="modal-label-tmpl" aria-hidden="true">
<div class="modal-header">
<button type="button" class="close" data-dismiss="modal" aria-hidden="true">x</button>
<h3 id="modal-label-tmpl">Modal header</h3>
</div>
<div id="modal-body-tmpl" class="modal-body"></div>
<div id="modal-foot-tmpl" class="modal-footer"></div>
</div>
{* setAndRunModal *}
<div id="setAndRunModal" class="modal hide fade" tabindex="-1" role="dialog" aria-labelledby="setAndRunModalLabel" aria-hidden="true">
<div class="modal-header">
<button type="button" class="close" data-dismiss="modal" aria-hidden="true">x</button>
<h3 id="setAndRunModalLabel"></h3>
</div>
<div id="setAndRunModalBody" class="modal-body"></div>
<div class="modal-footer">
<button id="reset_workflow" class="btn"><i class="icon-refresh"></i> Reset</button>
<button id="run_workflow" class="btn btn-primary"><i class="icon-cog icon-white"></i> Run</button>
</div>
</div>
{* Error only 1 raw modal *}
<div id="ng6modal-1raw" class="modal hide fade" tabindex="-1" role="dialog" aria-labelledby="modalLabel-1raw" aria-hidden="true">
<div class="modal-header">
<button type="button" class="close" data-dismiss="modal" aria-hidden="true">x</button>
<h3>Error</h3>
</div>
<div class="modal-body">
<div class='tx-nG6-pi1-error'>Only one row should be selected to access this fonctionality.</div>
</div>
<div class="modal-footer">
<button class="btn" data-dismiss="modal" aria-hidden="true"><i class="icon-remove"></i> Close</button>
</div>
</div>
{include file='../modals.tpl'}
ui/nG6/pi1/analyzes/BasicAnalyse.tpl
View file @ f982c9b4
......@@ -21,7 +21,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<br/>
<div style="float:right;">
{if $is_project_admin }
<button id="add_file" type="button" class="btn btn-small btn-primary"><i class="icon-plus icon-white"></i> add files</button>
<button id="add_file" type="button" class="btn btn-sm btn-primary"><i class="glyphicon glyphicon-plus"></i> add files</button>
{/if}
</div>
{/block}
......
ui/nG6/pi1/analyzes/BismarkMethylationExtractor.js
View file @ f982c9b4
......@@ -36,23 +36,6 @@ function resize(elt, ratio) {
}
$(function () {
$(".largeimglink").click(function() {
$("#modal-label-tmpl").html("NG6 <small> " + $("#analyse_name").val() + "</small>");
$("#modal-body-tmpl").html('<div id="img_container"><img id="modal_img" src="' + $(this).attr('href') + '" onload=vertical_centering("ng6modal") alt="Cannot display"></div>');
$("#modal-foot-tmpl").html('<button class="btn" data-dismiss="modal" aria-hidden="true"><i class="icon-remove"></i> Close</button>');
$("#ng6modal").css('margin-left', '-400px');
// Width
$("#modal_img").css("max-width", "2000px");
$("#ng6modal").css('width', '800px');
// Height
$("#modal-body-tmpl").css('max-height', modal_height(200, 50)+'px');
// Display
$("#ng6modal").modal();
return false;
});
/* Opens a window that all the element in the selected column */
$("#columns_extract").click(function() {
var samples = new Array() ;
......
ui/nG6/pi1/analyzes/BismarkMethylationExtractor.tpl
View file @ f982c9b4
......@@ -87,8 +87,8 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<td id="sample_{$i}_col_9">{$sample_results["default"].totalMethylatedCinCHH|number_format:0:' ':' '}</td>
<td id="sample_{$i}_col_10">{$sample_results["default"].totalUnmethylatedCinCHH|number_format:0:' ':' '}</td>
<td id="sample_{$i}_col_11">{round(($sample_results["default"].totalMethylatedCinCHH/($sample_results["default"].totalMethylatedCinCHH + $sample_results["default"].totalUnmethylatedCinCHH ))*100,2)}</td>
<td id="sample_{$i}_col_12"><a class="largeimglink" href="{$sample_results["R1"].img}">M-bias</a></td>
<td id="sample_{$i}_col_13"><a class="largeimglink" href="{$sample_results["R2"].img}">M-bias</a></td>
<td id="sample_{$i}_col_12"><a class="imglink" href="{$sample_results["R1"].img}">M-bias</a></td>
<td id="sample_{$i}_col_13"><a class="imglink" href="{$sample_results["R2"].img}">M-bias</a></td>
</tr>
{$i = $i + 1}
{else}
......
ui/nG6/pi1/analyzes/FastQC.js
View file @ f982c9b4
......@@ -36,23 +36,6 @@ function resize(elt, ratio) {
}
$(function () {
$(".largeimglink").click(function() {
$("#modal-label-tmpl").html("NG6 <small> " + $("#analyse_name").val() + "</small>");
$("#modal-body-tmpl").html('<div id="img_container"><img id="modal_img" src="' + $(this).attr('href') + '" onload=vertical_centering("ng6modal") alt="Cannot display"></div>');
$("#modal-foot-tmpl").html('<button class="btn" data-dismiss="modal" aria-hidden="true"><i class="icon-remove"></i> Close</button>');
$("#ng6modal").css('margin-left', '-400px');
// Width
$("#modal_img").css("max-width", "2000px");
$("#ng6modal").css('width', '800px');
// Height
$("#modal-body-tmpl").css('max-height', modal_height(200, 50)+'px');
// Display
$("#ng6modal").modal();
return false;
});
/* Opens a window that all the element in the selected column */
$("#columns_extract").click(function() {
var samples = new Array() ;
......@@ -130,14 +113,14 @@ $(function () {
// Display images table
$("#modal-label-tmpl").html("NG6 <small> " + $("#analyse_name").val() + "</small>");
$("#modal-body-tmpl").html('<div id="table_container"></div>');
$("#modal-foot-tmpl").html('<button class="btn" data-dismiss="modal" aria-hidden="true"><i class="icon-remove"></i> Close</button>');
$("#ng6modal").css('width', '870px');
$("#ng6modal").css('top', '0%');
$("#ng6modal").css('margin-top', '20px');
$("#modal-body-tmpl").css('max-height', modal_height(200, 50)+'px');
$("#ng6modal").css('margin-left', '-435px');
$("#table_container").append( '<table class="table table-striped table-bordered dataTable">' + thead + tbody + '</table>' );
$("#modal-body-tmpl").html('<div id="table_container" style="overflow-x : auto"></div>');
$("#modal-foot-tmpl").html('<button class="btn btn-default" data-dismiss="modal" aria-hidden="true"><i class="glyphicon glyphicon-remove"></i> Close</button>');
$("#ng6modal .modal-content").css({
'width' : '870px',
'max-height' : modal_height(200, 50)+'px'
});
$("#ng6modal").css('margin-left', '-135px');
$("#table_container").append( '<table class="table table-striped table-bordered ">' + thead + tbody + '</table>' );
$("#ng6modal").modal();
}
......
ui/nG6/pi1/analyzes/FastQC.tpl
View file @ f982c9b4
......@@ -65,10 +65,10 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{if $analyse_results|@count > 1 }
<td id='sample_{$i}_col_1' class="sample_name">{$sample|get_description:$descriptions}</td>
{/if}
<td id="sample_{$i}_col_2"><a class="largeimglink" href="{$sample_results["pbqpng"].img}"> {$sample_results["pbqpng"].result} </a></td>
<td id="sample_{$i}_col_3"><a class="largeimglink" href="{$sample_results["pbgcpng"].img}"> {$sample_results["pbgcpng"].result} </a></td>
<td id="sample_{$i}_col_4"><a class="largeimglink" href="{$sample_results["pbnspng"].img}"> {$sample_results["pbnspng"].result} </a></td>
<td id="sample_{$i}_col_5"><a class="largeimglink" href="{$sample_results["pbspng"].img}"> {$sample_results["pbspng"].result} </a></td>
<td id="sample_{$i}_col_2"><a class="imglink" href="{$sample_results["pbqpng"].img}"> {$sample_results["pbqpng"].result} </a></td>
<td id="sample_{$i}_col_3"><a class="imglink" href="{$sample_results["pbgcpng"].img}"> {$sample_results["pbgcpng"].result} </a></td>
<td id="sample_{$i}_col_4"><a class="imglink" href="{$sample_results["pbnspng"].img}"> {$sample_results["pbnspng"].result} </a></td>
<td id="sample_{$i}_col_5"><a class="imglink" href="{$sample_results["pbspng"].img}"> {$sample_results["pbspng"].result} </a></td>
<td id="sample_{$i}_col_6">{$sample_results["default"].nbseq|number_format:0:' ':' '}</td>
<td id="sample_{$i}_col_7"><a class="imglink" href="{$sample_results["psqpng"].img}"> {$sample_results["psqpng"].result} </a></td>
<td id="sample_{$i}_col_8">{$sample_results["psgcpng"].value}(<a class="imglink" href="{$sample_results["psgcpng"].img}">{$sample_results["psgcpng"].result}</a>)</td>
......@@ -102,7 +102,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<tr>
<th align="left" colspan="{if $analyse_results|@count > 1}13{else}12{/if}">
With selection :
<button type="button" class="btn multiple-selection-btn" id="columns_extract"><i class="icon-picture"></i> Compare</button>
<button type="button" class="btn btn-default multiple-selection-btn" id="columns_extract"><i class="glyphicon glyphicon-picture"></i> Compare</button>
</th>
</tr>
</tfoot>
......
ui/nG6/pi1/class.tx_nG6_pi1.php
View file @ f982c9b4
......@@ -62,31 +62,40 @@ class tx_nG6_pi1 extends tslib_pibase {
// Add the ng6 plugins css
$GLOBALS['TSFE']->additionalHeaderData[$this->prefixId] = '
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery-1.8.3.min.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.min.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.tmpl.min.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.ui.widget.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.iframe-transport.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.fileupload.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.fileupload-process.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.fileupload-validate.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.validate.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/wysihtml5-0.3.0.min.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/bootstrap.min.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/bootstrap-editable.min.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/bootstrap-datepicker.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/bootstrap-typeahead.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/wysihtml5-0.3.0.min.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/bootstrap-wysihtml5-0.0.2.min.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.dataTables.min.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/DT_bootstrap.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.validate.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/bootstrap3-wysihtml5.all.min.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/dataTables.bootstrap.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/cytoscape.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/cytoscape.js-panzoom.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/typeahead.bundle.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jflow-activewf.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jflow-availablewf.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jflow-wfform.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jflow-wfoutputs.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jflow-wfstatus.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/jquery.tmpl.min.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/tx_nG6_pi1.js"></script>
<script type="text/javascript" src="'.t3lib_extMgm::siteRelPath($this->extKey).'res/js/tx_nG6_utils.js"></script>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jflow.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/bootstrap.min.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/bootstrap-responsive.min.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/bootstrap-wysihtml5-0.0.2.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/DT_bootstrap.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/bootstrap-editable.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/bootstrap3-wysihtml5.min.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/dataTables.bootstrap.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/bootstrap-editable.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/typeaheadjs.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/datepicker.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/cytoscape.js-panzoom.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/font-awesome.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/jflow.css"/>
<link type="text/css" rel="stylesheet" media="screen" href="'.t3lib_extMgm::siteRelPath($this->extKey).'res/css/tx_nG6.css"/>';
tx_nG6_db::check_db_rights_level();
......@@ -192,6 +201,8 @@ class tx_nG6_pi1 extends tslib_pibase {
$smarty->assign('server_url', $this->conf['server_url']);
$smarty->assign('single_project_display', $single_project_display);
$smarty->assign('is_ng6_admin', tx_nG6_db::is_ng6_administrator($user_id) ? true : false);
$userval = tx_nG6_db::get_user_informations($user_id);
$smarty->assign('user_email', $userval['email']);
// If it's a single project, add runs and analysis information
if ($single_project_display) {
......@@ -281,6 +292,8 @@ class tx_nG6_pi1 extends tslib_pibase {
$smarty->assign('server_url', $this->conf['server_url']);
$smarty->assign('run_ids', substr($run_ids,0,-1));
$smarty->assign('single_run_display', $single_run_display);
$userval = tx_nG6_db::get_user_informations($user_id);
$smarty->assign('user_email', $userval['email']);
// If it's a single run, add analysis information
if ($single_run_display) {
......@@ -354,6 +367,8 @@ class tx_nG6_pi1 extends tslib_pibase {
$smarty->assign('server_url', $this->conf['server_url']);
$smarty->assign('user_login', $GLOBALS['TSFE']->fe_user->user['username']);
$smarty->assign('user_id', $GLOBALS['TSFE']->fe_user->user['uid']);
$userval = tx_nG6_db::get_user_informations($user_id);
$smarty->assign('user_email', $userval['email']);
// Then select analyse results
$results = tx_nG6_db::select_analyse_results($this->piVars['analyze_id']);
......
ui/nG6/pi1/comments.tpl
View file @ f982c9b4
......@@ -18,8 +18,8 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<div class="tab-pane fade comment-tab" id="{$tab_id}">
{if $comments}
{foreach from=$comments key=comm_id item=cdata}
<div class="comment-block" id="comment_id_{$cdata.id}">
<div class='comment-block-header'>
<div class="comment-block ng6-block-box" id="comment_id_{$cdata.id}">
<div class='comment-block-header ng6-block-box-header'>
<i class="icon-user"></i>{$cdata.cruser_info.username}
{$cdata.date}
{if $cdata.cruser_info.uid == $user_id}
......@@ -27,7 +27,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{/if}
</div>
<div class="comment-block-body">{$cdata.comment}</div>
<div class="comment-block-body ng6-block-box-body">{$cdata.comment}</div>
</div>
{/foreach}
{else}
......@@ -38,7 +38,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<div class="new-comment-block">
New comment
<textarea class="wysihtml5-textarea" ></textarea>
<div style="text-align : right;"><button id="post-comment" type="button" class="btn btn-small btn-primary">Post comment</button></div>
<div style="text-align : right; margin-top : 5px"><button id="post-comment" type="button" class="btn btn-sm btn-primary">Post comment</button></div>
</div>
{/if}
</div>
ui/nG6/pi1/install_view.tpl
View file @ f982c9b4
......@@ -35,76 +35,76 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<input type="hidden" id="server_url" value="{$server_url}" />
<input type="hidden" id="pid" value="{$pid}" />
<div class="control-group">
<label class="control-label">Last name</label>
<div class="controls">
<input type="text" id="last_name_val" class="typeahead" name="last_name_val" placeholder="Last name"/>
<div class="form-group">
<label class="col-sm-2 control-label">Last name</label>
<div class="col-sm-10">
<input type="text" id="last_name_val" class="form-control" name="last_name_val" placeholder="Last name"/>
</div>
</div>
<div class="control-group">
<label class="control-label">First name</label>
<div class="controls">
<input type="text" id="first_name_val" class="typeahead" name="first_name_val" placeholder="First name"/>
<div class="form-group">
<label class="col-sm-2 control-label">First name</label>
<div class="col-sm-10">
<input type="text" id="first_name_val" class="form-control" name="first_name_val" placeholder="First name"/>
</div>
</div>
<div class="control-group">
<label class="control-label">Login</label>
<div class="controls">
<input type="text" id="username_val" class="typeahead" name="username_val" placeholder="Login"/>
<div class="form-group">
<label class="col-sm-2 control-label">Login</label>
<div class="col-sm-10">
<input type="text" id="username_val" class="form-control" name="username_val" placeholder="Login"/>
</div>
</div>
<div class="control-group">
<label class="control-label">Password</label>
<div class="controls">
<div class="form-group">
<label class="col-sm-2 control-label">Password</label>
<div class="col-sm-10">
<div class="input-append">
<input class="text" type="password" id="user_password_pwd_val" name="user_password_pwd_val" placeholder="Password"/>
<input class="form-control" type="password" id="user_password_pwd_val" name="user_password_pwd_val" placeholder="Password"/>
</div>
</div>
</div>
<div class="control-group">
<label class="control-label">Retype password</label>
<div class="controls">
<div class="form-group">
<label class="col-sm-2 control-label">Retype password</label>
<div class="col-sm-10">
<div class="input-append">
<input class="text" type="password" id="user_password_pwd2_val" name="user_password_pwd2_val" placeholder="Password"/>
<input class="form-control" type="password" id="user_password_pwd2_val" name="user_password_pwd2_val" placeholder="Password"/>
</div>
</div>
</div>
<div class="control-group">
<label class="control-label">Email</label>
<div class="controls">
<input type="text" id="email_val" class="typeahead" name="email_val" placeholder="Email"/>
<div class="form-group">
<label class="col-sm-2 control-label">Email</label>
<div class="col-sm-10">
<input type="text" id="email_val" class="form-control" name="email_val" placeholder="Email"/>
</div>
</div>
<div class="control-group">
<label class="control-label">Laboratory</label>
<div class="controls">
<input type="text" id="title_val" class="group_typeahead" name="title_val" placeholder="Laboratory"/>
<div class="form-group">
<label class="col-sm-2 control-label">Laboratory</label>
<div class="col-sm-10">
<input type="text" id="title_val" class="form-control" name="title_val" placeholder="Laboratory"/>
</div>
</div>
<div class="control-group">
<label class="control-label">Organism</label>
<div class="controls">
<input type="text" id="organism_val" class="group_typeahead" name="organism_val" placeholder="Organism"/>
<div class="form-group">
<label class="col-sm-2 control-label">Organism</label>
<div class="col-sm-10">