Commit f97f3bc3 authored by Penom Nom's avatar Penom Nom
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parent c04a96d8
......@@ -19,9 +19,6 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{block name=params_title} Alignment options {/block}
{block name=params_content}
{assign var="params" value=";"|explode:$analyse.params}
{foreach from=$analyse_results key=sample item=sample_results}
{assign var="sample" value=$sample}
{/foreach}
<ul>
{foreach from=$params item=param}
{assign var="args_cmd" value=","|explode:$param}
......@@ -38,9 +35,8 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<li class="parameter">The size of kmers is {$params_cmd[$ksize_index[0]+1]}.</li>
{/if}
{/foreach}
<ul>
<li class="parameter">{$param}</li>
</ul>
<br />
<li class="parameter">{$param}</li>
{/if}
{if in_array("screen.seqs(fasta=FILE.align", $args_cmd)}
......
......@@ -20,14 +20,10 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{block name=params_title} Mothur commands and parameters used {/block}
{block name=params_content}
{assign var="params" value=";"|explode:$analyse.params}
{foreach from=$analyse_results key=sample item=sample_results}
{assign var="sample" value=$sample}
{/foreach}
<ul>
<li class="parameter">stability.file is created from read1.fastq and read2.fastq for all samples</li>
{foreach from=$params item=param}
{assign var="args_cmd" value=","|explode:$param}
{if in_array("#make.contigs(file=stability.file", $args_cmd)}
{foreach from=$args_cmd item=arg_cmd}
{assign var="params_cmd" value="="|explode:$arg_cmd}
......@@ -36,13 +32,6 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<li class="parameter">The maximum number of differences allowed with the primer is {$params_cmd[$pdiffs_index[0]+1]|replace:')':''}.</li>
{/if}
{/foreach}
<ul>
<li class="parameter">{$param}</li>
</ul>
{/if}
{if in_array("#make.contigs(file=stability.file)", $args_cmd)}
<li class="parameter">{$param}</li>
{/if}
{if in_array("#screen.seqs(fasta=FILE.fasta", $args_cmd)}
......@@ -57,11 +46,11 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<li class="parameter">Remove any sequences with anything longer than {$params_cmd[$maxlength_index[0]+1]|replace:')':''} bp.</li>
{/if}
{/foreach}
<ul>
<li class="parameter">{$param}</li>
</ul>
{/if}
{/foreach}
<br />
{foreach from=$params item=param}
<li class="parameter">{$param}</li>
{/foreach}
</ul>
{/block}
......
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