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genotoul-bioinfo
ng6
Commits
f97bc74a
Commit
f97bc74a
authored
Nov 12, 2020
by
Romain Therville
🐭
Browse files
Merge branch 'dev' into 'master'
Merge branch Dev with master See merge request
!110
parents
430ce29c
1184f821
Changes
2
Show whitespace changes
Inline
Side-by-side
src/ng6/analysis.py
View file @
f97bc74a
...
...
@@ -713,14 +713,6 @@ class Analysis (Component):
result
=
t3mysql
.
get_analysis_creation_date
(
str
(
self
.
id
))
return
next
(
iter
(
result
))
def
get_directory
(
self
):
"""
Returns an analysis's directory
"""
if
self
.
id
!=
None
:
t3mysql
=
t3MySQLdb
()
return
t3mysql
.
select_analysis_directory
(
str
(
self
.
id
))
def
change_space
(
self
,
space_id
):
import
os
from
ng6.project
import
Project
...
...
@@ -760,7 +752,14 @@ class Analysis (Component):
return
[
retcode
,
str_cmd
]
def
get_web_filepath
(
self
,
file_name
,
base_filepath
=
'fileadmin'
):
return
base_filepath
+
os
.
path
.
join
(
self
.
directory
,
file_name
)
def
get_web_filepath
(
self
,
file_name
,
base_filepath
=
'fileadmin'
):
"""
returns the full web filepath from a given filename
@param file_name : the path to the file to link
@param base_filepath : the first directory in the path (depends on the server's directory structure)
@return : the full web filepath
"""
return
base_filepath
+
os
.
path
.
join
(
self
.
get_directory
(),
file_name
)
ui/nG6/lib/class.tx_nG6_utils.php
View file @
f97bc74a
...
...
@@ -160,7 +160,8 @@ class tx_nG6_utils {
return
0
;
}
$stream
=
ssh2_exec
(
$connection
,
'find '
.
$directory
.
' -maxdepth 1 -not -name "*.html" -not -name "*.png" -type f -exec rm -f {} \;'
);
#Exclusion of the log files from the purge process
$stream
=
ssh2_exec
(
$connection
,
'find '
.
$directory
.
' -maxdepth 1 -not -name "*.html" -not -name "*.png" -not -name "*.log" -not -name "*.log.gz" -not -name "*.pdf" -not -name "md5sum.txt" -not -name "*GXB02039*" -not -name "*PCT0078*" -type f -exec rm -f {} \;'
);
$errorStream
=
ssh2_fetch_stream
(
$stream
,
SSH2_STREAM_STDERR
);
// Enable blocking for both streams
stream_set_blocking
(
$errorStream
,
true
);
...
...
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