From f4a00f4d32d853141435868c8e8721c04a3f2061 Mon Sep 17 00:00:00 2001
From: gsalin <gerald.salin@inrae.fr>
Date: Thu, 2 May 2024 12:06:37 +0200
Subject: [PATCH] update regexp to keet sample name and associated barcode to
be displayed in demulitplexont analysis in NG6
---
workflows/ont_qc/components/demultiplexont.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/workflows/ont_qc/components/demultiplexont.py b/workflows/ont_qc/components/demultiplexont.py
index f9725186f..66b8a8b84 100644
--- a/workflows/ont_qc/components/demultiplexont.py
+++ b/workflows/ont_qc/components/demultiplexont.py
@@ -85,7 +85,7 @@ class Demultiplex_ONT (Analysis):
if re.search("undetermined.", fastq):
fastq_name = os.path.basename(fastq).split('.')[0].split('_')[-1]
else:
- fastq_name = "_".join(os.path.basename(fastq).split('.')[0].split('_')[2:3])
+ fastq_name = "_".join(os.path.basename(fastq).split('.')[0].split('_')[1:3])
#fastq_name = "_".join(os.path.basename(fastq).split('.')[0].split('_')[-2:])
logging.getLogger("demultiplexont.process").debug("DemultiplexONT.fast_name = "+fastq_name)
--
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