Add data to test gene_diversity.

workflows/gene_diversity/data/gene_diversity.conf

@@ -31,41 +31,41 @@ MiSeq
 1 Lane
 --species
 Bacteria
---read_1
+--read-1
 workflows/gene_diversity/data/cDNA-sample1-day-replicate1_GAACGA_L001_R1.fastq.gz
---read_2
+--read-2
 workflows/gene_diversity/data/cDNA-sample1-day-replicate1_GAACGA_L001_R2.fastq.gz
---read_1
+--read-1
 workflows/gene_diversity/data/cDNA-sample1-day-replicate2_GGTCGG_L001_R1.fastq.gz
---read_2
+--read-2
 workflows/gene_diversity/data/cDNA-sample1-day-replicate2_GGTCGG_L001_R2.fastq.gz
---read_1
+--read-1
 workflows/gene_diversity/data/cDNA-sample1-day-replicate3_GACTAG_L001_R1.fastq.gz
---read_2
+--read-2
 workflows/gene_diversity/data/cDNA-sample1-day-replicate3_GACTAG_L001_R2.fastq.gz
---read_1
+--read-1
 workflows/gene_diversity/data/cDNA-sample1-night-replicate1_GCATTG_L001_R1.fastq.gz
---read_2
+--read-2
 workflows/gene_diversity/data/cDNA-sample1-night-replicate1_GCATTG_L001_R2.fastq.gz
---read_1
+--read-1
 workflows/gene_diversity/data/cDNA-sample1-night-replicate2_TTGCGG_L001_R1.fastq.gz
---read_2
+--read-2
 workflows/gene_diversity/data/cDNA-sample1-night-replicate2_TTGCGG_L001_R2.fastq.gz
---read_1
+--read-1
 workflows/gene_diversity/data/cDNA-sample1-night-replicate3_TATGAG_L001_R1.fastq.gz
---read_2
+--read-2
 workflows/gene_diversity/data/cDNA-sample1-night-replicate3_TATGAG_L001_R2.fastq.gz
---read_1
+--read-1
 workflows/gene_diversity/data/cDNA-sample2-day-replicate1_GGATAT_L001_R1.fastq.gz
---read_2
+--read-2
 workflows/gene_diversity/data/cDNA-sample2-day-replicate1_GGATAT_L001_R2.fastq.gz
---read_1
+--read-1
 workflows/gene_diversity/data/cDNA-sample2-day-replicate2_ACGCTG_L001_R1.fastq.gz
---read_2
+--read-2
 workflows/gene_diversity/data/cDNA-sample2-day-replicate2_ACGCTG_L001_R2.fastq.gz
---read_1
+--read-1
 workflows/gene_diversity/data/cDNA-sample2-day-replicate3_TCCGCG_L001_R1.fastq.gz
---read_2
+--read-2
 workflows/gene_diversity/data/cDNA-sample2-day-replicate3_TCCGCG_L001_R2.fastq.gz
 --database
 workflows/gene_diversity/data/database_dsrb.fasta
@@ -82,4 +82,6 @@ workflows/gene_diversity/data/taxonomy_dsrB.tsv
 --max-n
 0
 --otu-identity-threshold
-0.97
\ No newline at end of file
+0.97
+--select
+100
\ No newline at end of file