Maintenance - Mise à jour mensuelle Lundi 1 Juin 2020 entre 7h00 et 9h00

Commit e6ceb1a1 authored by Jerome Mariette's avatar Jerome Mariette

add a first version of a read me

parent 716752c3
#
# NG6 - Next Generation Sequencing Information System
# Copyright (C) 2009 INRA
#
# This program is free software: you can redistribute it and/or modify
# it under the terms of the GNU General Public License as published by
# the Free Software Foundation, either version 3 of the License, or
# (at your option) any later version.
#
# This program is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
# GNU General Public License for more details.
#
# You should have received a copy of the GNU General Public License
# along with this program. If not, see <http://www.gnu.org/licenses/>.
#
1. WHAT IS NG6
NG6 is a user friendly information system able to manage large sets of sequencing data. It includes, on one hand,
a set of pipelines adapted to different input formats (sff, fastq), different sequencers (Roche 454, Illumina HiSeq,
ABI Solid) and various analysis (quality control, variation discovery, RNAseq, diversity studies, ...) and, on the
other hand, a secured web site giving access to the results. The user will be able to download raw and processed
data and browse through the analysis results statistics. The provided workflows are easy to build, modify and extend.
The system is based on makeflow and runs the analysis locally or in a cluster environment such as Sun Grid Engine.
2. DEPENDENCIES
NG6 has some dependencies :
- python 2.6 or higher
- python Mysqldb : You can download mysql-python at http://mysql-python.sourceforge.net/
3. INSTALLATION GUIDELINES
# Download the source from the svn repository
svn checkout svn://scm.mulcyber.toulouse.inra.fr/svnroot/ng6/nG6
# Then to make sure your installation succeed, NG6 help should be displayed when typing the following command :
python bin/ng6_cli.py --help
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