Exclude parameters.

workflows/miseq_diversity/workflow.properties

@@ -43,17 +43,17 @@ lane_number.help = Which lane should be processed (mandatory with casava-directo
 lane_number.required = True
 lane_number.exclude = read_1
 
-read1_files.name = read_1
-read1_files.flag = --read-1
-read1_files.help = Read1
-read1_files.action = append
-read1_files.required = True
-read1_files.exclude = casava_directory
-
-read2_files.name = read_2
-read2_files.flag = --read-2
-read2_files.help = Read2
-read2_files.action = append
+read1.name = read_1
+read1.flag = --read-1
+read1.help = Read1
+read1.action = append
+read1.required = True
+read1.exclude = casava_directory
+
+read2.name = read_2
+read2.flag = --read-2
+read2.help = Read2
+read2.action = append
 
 keep_reads.name = keep_reads
 keep_reads.flag = --keep