Commit daac017d authored by Claire Kuchly's avatar Claire Kuchly
Browse files

concatenate sorted file

parent 68e66f2b
......@@ -99,6 +99,8 @@ class IlluminaDiversityQC (NG6Workflow):
concatenate1 = self.add_component("ConcatenateFilesGroups", [filtered_read1_files, (Utils.get_group_basenames(self.read1_files, "read")).keys()],component_prefix="read1")
concatenate2 = self.add_component("ConcatenateFilesGroups", [filtered_read2_files, (Utils.get_group_basenames(self.read2_files, "read")).keys()],component_prefix="read2")
concatenate1.concat_files = sorted(concatenate1.concat_files)
concatenate2.concat_files = sorted(concatenate2.concat_files)
# make some statistics on raw file
fastqc = self.add_component("FastQC", [filtered_read1_files+filtered_read2_files, (group_prefix is not None), True, run_name+"_fastqc.tar.gz"], parent = fastqilluminafilter)
......
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