Commit d46d63ca authored by Jerome Mariette's avatar Jerome Mariette
Browse files

delete old compioentn runassembly2ng6

parent 90efa278
[interface]
classification = ng6
[parameters]
; The analyse name to display in ng6
$;ANALYSE_NAME$;=RunAssembly
; The analyse description to display in ng6
$;ANALYSE_DESCRIPTION$;=Assemblage de novo des lectures par mid.
; The analyse software
$;ANALYSE_SOFTWARE$;=newbler
; The analyse software version
$;ANALYSE_SOFTWARE_VERSION$;=2.3
; The analyse software parameters
$;ANALYSE_SOFTWARE_PARAMETERS$;=
; The run_assembly results archive name
$;RESULTS_ARCHIVE_NAME$; = `cat $;REPOSITORY_ROOT$;/output_repository/gunzip/$;PIPELINEID$;_raw_input/gunzip.list | perl -lne "printf qq(basename %s .sff\n),\\$_;" | sh`_run_assembly.tar.gz
[input]
$;INPUT_FILE_LIST$; =
$;INPUT_FILE$; = $;REPOSITORY_ROOT$;/output_repository/create_list_dir/$;PIPELINEID$;_run_assembly/filelist.list
$;INPUT_DIRECTORY$; =
;; the following is only used when iterating over an INPUT_DIRECTORY
$;INPUT_EXTENSION$; = fsa
; The run config file the analyse belongs to
$;NG6CFG_FILE$; = $;REPOSITORY_ROOT$;/output_repository/ng6run2ergatis/$;PIPELINEID$;_raw_input/run.cfg
; OR The project id the analyse belongs to
$;PROJECT_ID$; =
;; this will be the root of the IDs generated, usually just the project abbreviation.
$;ID_ROOT$;=$;PROJECT$;
[output]
$;OUTPUT_TOKEN$;=run_assembly
$;OUTPUT_DIRECTORY$;=$;REPOSITORY_ROOT$;/output_repository/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
[component]
$;COMPONENT_NAME$;=runassembly2ng6
$;DESCRIPTION$;=Add assembly analysis to ng6 run use the ng6 cfg file
$;WORKFLOW_REPOSITORY$;=$;REPOSITORY_ROOT$;/workflow/runtime/$;COMPONENT_NAME$;/$;PIPELINEID$;_$;OUTPUT_TOKEN$;
$;PIPELINE_TOKEN$;=unnamed
;The version,revision,tag here is set by an interpolated CVS tag
$;VERSION$;=$Name$
$;RELEASE_TAG$;=$Name$
$;REVISION$;=$Revision: 5801 $
$;TEMPLATE_XML$; = $;DOCS_DIR$;/$;COMPONENT_NAME$;.xml
$;ITERATOR1$; = i1
$;ITERATOR1_XML$; = $;DOCS_DIR$;/$;COMPONENT_NAME$;.$;ITERATOR1$;.xml
;Distributed options
$;GROUP_COUNT$; = 150
$;NODISTRIB$; = 0
;the following keys are replaced at runtime by the invocation script
$;COMPONENT_CONFIG$;=
$;COMPONENT_XML$;=
$;PIPELINE_XML$;=
$;PIPELINEID$;=
[include]
$;PROJECT_CONFIG$;=/work/ng6/ergatis/workflow/project.config
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