Commit d27b7108 authored by Jerome Mariette's avatar Jerome Mariette
Browse files

update jflow

parent 9de87188
......@@ -51,7 +51,7 @@ class Component(object):
self.version = self.version.decode()
self.batch_options = self.config_reader.get_component_batch_options(self.__class__.__name__)
# in case of SGE, parse the cpu and memory parameter
type, options, limit_submission = self.jflow_config_reader.get_batch()
type, options, limit_submission = self.config_reader.get_batch()
if type.lower() == "sge":
try:
self.__cpu = int(re.match( r'.*-pe\s+(\w+)\s+(\d+)\s?.*', self.batch_options).group(2))
......
......@@ -103,7 +103,7 @@ class VCFReader(_AbstractFeatureReader):
info[tab[0]] = True
variation.addattr( 'info', info)
if len(row) > 8 :
format = row[8].split(';')
format = row[8].split(':')
variation.format = format
for lib_infos in range (9,len(row)) :
if not regexp_none.match(row[lib_infos]):
......
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