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genotoul-bioinfo
ng6
Commits
d1a02287
Commit
d1a02287
authored
Jul 30, 2012
by
Celine Noirot
Browse files
uncoment remove file
parent
4e492c6f
Changes
1
Hide whitespace changes
Inline
Side-by-side
454/bin/adaptorcleaner.py
View file @
d1a02287
...
...
@@ -96,8 +96,8 @@ def mask_sequences (fafile, len_adapt, options, log, minscore,minmatch , tab_ada
log
.
write
(
"###Number of sequences with adaptor "
+
adapt_ids
+
" "
+
str
(
len
(
adaptators_found
.
keys
()))
+
"
\n
"
)
# Clean up temp files
#
os.remove(os.path.join(options.output, os.path.basename(options.fasta) + "."+ adapt_ids + ".oligo"))
#
os.remove(os.path.join(options.output, os.path.basename(options.fasta)) + "."+ adapt_ids + ".cross_match.res")
os
.
remove
(
os
.
path
.
join
(
options
.
output
,
os
.
path
.
basename
(
options
.
fasta
)
+
"."
+
adapt_ids
+
".oligo"
))
os
.
remove
(
os
.
path
.
join
(
options
.
output
,
os
.
path
.
basename
(
options
.
fasta
))
+
"."
+
adapt_ids
+
".cross_match.res"
)
return
(
os
.
path
.
join
(
options
.
output
,
os
.
path
.
basename
(
options
.
fasta
)
+
"."
+
adapt_ids
+
".screen.fasta"
))
...
...
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