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genotoul-bioinfo
ng6
Commits
c4102f5a
Commit
c4102f5a
authored
Aug 28, 2014
by
Penom Nom
Browse files
edit only editable analyses
parent
1805799a
Changes
3
Hide whitespace changes
Inline
Side-by-side
ui/nG6/pi1/analyzes/AnalysisTemplate.tpl
View file @
c4102f5a
...
...
@@ -17,8 +17,9 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
{
block
name
=
description
}
<div
class=
"sub-content sc-top"
>
<div
class=
"sub-content sc-top"
>
{
block
name
=
description
}
<div
class=
"ng6-content-header-left analysis"
>
<h2>
Analysis
<small>
{
$analyse.name
}
</small></h2>
</div>
...
...
@@ -26,79 +27,105 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{
$analyse.description
}
<br
/>
All data related to this analysis use
<strong>
{
$analyse_size
}
</strong>
on the hard drive.
{
block
name
=
description_update
}{/
block
}
</div>
<div
style=
"clear:both"
></div>
</div>
{/
block
}
{/
block
}
</div>
<div
class=
"sub-content sc-bottom"
>
{
block
name
=
content
}
<ul
id=
"myTab"
class=
"nav nav-tabs"
>
<li
class=
"active"
><a
href=
"#results"
data-toggle=
"tab"
>
{
block
name
=
results_title
}
Results
{/
block
}
</a></li>
{
if
$analyse.params
!=
""
}
<li><a
href=
"#parameters"
data-toggle=
"tab"
>
{
block
name
=
params_title
}
Parameters
{/
block
}
</a></li>
{/
if
}
<li><a
href=
"#downloads"
data-toggle=
"tab"
>
{
block
name
=
downloads_title
}
Downloads
{/
block
}
</a></li>
</ul>
<div
id=
"myTabContent"
class=
"tab-content"
>
<div
class=
"tab-pane fade in active"
id=
"results"
>
{
block
name
=
results
}{/
block
}
</div>
{
if
$analyse.params
!=
""
}
<div
class=
"tab-pane fade"
id=
"parameters"
>
{
block
name
=
params
}
{
block
name
=
params_content
}
<ul>
<li
class=
"parameter"
>
{
$analyse.params
}
</li>
</ul>
{/
block
}
{
block
name
=
command_line_content
}
{
if
$is_project_admin
}
<br/>
<br/>
<div
class=
"editable-block"
>
<span
class=
"editable-block-head label label-info"
>
Command
</span>
<i>
{
$analyse.software
}
</i>
<span
class=
"editable editable-block-content"
id=
"editable-command-line"
data-pk=
"
{
$analyze_id
}
"
data-url=
"index.php?eID=tx_nG6&type=update_db_field&table=tx_nG6_analyze&field=params"
data-type=
"textarea"
>
{
$analyse.params
}
</span>
</div>
{/
if
}
{/
block
}
<ul
id=
"myTab"
class=
"nav nav-tabs"
>
{
block
name
=
nav_menu_results
}
<li
class=
"active"
><a
href=
"#results"
data-toggle=
"tab"
>
{
block
name
=
results_title
}
Results
{/
block
}
</a></li>
{/
block
}
</div>
{/
if
}
<div
class=
"tab-pane fade"
id=
"downloads"
>
{
block
name
=
download
}
{
assign
var
=
"nb_files"
value
=
0
}
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
assign
var
=
"link"
value
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
{
if
$file
!=
"."
and
$file
!=
""
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
and
!
is_dir
(
$link
)
}
{
$nb_files
=
$nb_files
+
1
}
{/
if
}
{/
foreach
}
{
if
$nb_files
==
0
}
<div
class=
"alert alert-info"
>
Results folder not synchronized yet...
{
block
name
=
nav_menu_params
}
{
if
$analyse.params
!=
""
}
<li><a
href=
"#parameters"
data-toggle=
"tab"
>
{
block
name
=
params_title
}
Parameters
{/
block
}
</a></li>
{/
if
}
{/
block
}
{
block
name
=
nav_menu_downloads
}
<li><a
href=
"#downloads"
data-toggle=
"tab"
>
{
block
name
=
downloads_title
}
Downloads
{/
block
}
</a></li>
{/
block
}
{
block
name
=
nav_menu_update
}{/
block
}
</ul>
<div
id=
"myTabContent"
class=
"tab-content"
>
{
block
name
=
tab_content_results
}
<div
class=
"tab-pane fade in active"
id=
"results"
>
{
block
name
=
results
}{/
block
}
</div>
{/
block
}
{
block
name
=
tab_content_params
}
{
if
$analyse.params
!=
""
}
<div
class=
"tab-pane fade"
id=
"parameters"
>
{
block
name
=
params
}
{
block
name
=
params_content
}
<ul>
<li
class=
"parameter"
>
{
$analyse.params
}
</li>
</ul>
{/
block
}
{
block
name
=
command_line_content
}
{
if
$is_project_admin
&&
$analyse.is_editable
}
<br/>
<br/>
<div
class=
"editable-block"
>
<span
class=
"editable-block-head label label-info"
>
Command
</span>
<i>
{
$analyse.software
}
</i>
<span
class=
"editable editable-block-content"
id=
"editable-command-line"
data-pk=
"
{
$analyze_id
}
"
data-url=
"index.php?eID=tx_nG6&type=update_db_field&table=tx_nG6_analyze&field=params"
data-type=
"textarea"
>
{
$analyse.params
}
</span>
</div>
{/
if
}
{/
block
}
{/
block
}
</div>
{
else
}
<ul>
{/
if
}
{/
block
}
{
block
name
=
tab_content_downloads
}
<div
class=
"tab-pane fade"
id=
"downloads"
>
{
block
name
=
download
}
{
assign
var
=
"nb_files"
value
=
0
}
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
assign
var
=
"link"
value
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
{
if
$file
!=
"."
and
$file
!=
""
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
and
!
is_dir
(
$link
)
}
<li
class=
"filelist"
><a
href=
"
{
$link
}
"
>
{
$file
}
</a>
</li>
{/
if
}
{
assign
var
=
"link"
value
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
{
if
$file
!=
"."
and
$file
!=
""
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
and
!
is_dir
(
$link
)
}
{
$nb_files
=
$nb_files
+
1
}
{/
if
}
{/
foreach
}
</ul>
{/
if
}
{
if
$nb_files
==
0
}
<div
class=
"alert alert-info"
>
Results folder not synchronized yet...
</div>
{
else
}
<ul>
{
foreach
$dir
|
scandir
as
$file
}
{
assign
var
=
"link"
value
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
{
if
$file
!=
"."
and
$file
!=
""
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
and
!
is_dir
(
$link
)
}
<li
class=
"filelist"
><a
href=
"
{
$link
}
"
>
{
$file
}
</a>
</li>
{/
if
}
{/
foreach
}
</ul>
{/
if
}
{/
block
}
</div>
{/
block
}
{
block
name
=
tab_content_update
}{/
block
}
</div>
</div>
{/
block
}
</div>
...
...
ui/nG6/pi1/analyzes/BasicAnalyse.tpl
View file @
c4102f5a
...
...
@@ -17,73 +17,15 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{
extends
file
=
'AnalysisTemplate.tpl'
}
{
block
name
=
description
}
<div
class=
"sub-content sc-top"
>
<div
class=
"ng6-content-header-left analysis"
>
<h2>
Analysis
<small>
{
$analyse.name
}
</small></h2>
</div>
<div
class=
"ng6-content-header-right"
>
{
$analyse.description
}
<br
/>
All data related to this analysis use
<strong>
{
$analyse_size
}
</strong>
on the hard drive.
<br/>
<div
style=
"float:right;"
>
{
if
$is_project_admin
}
<button
id=
"add_file"
type=
"button"
class=
"btn btn-small btn-primary"
><i
class=
"icon-plus icon-white"
></i>
add files
</button>
{/
if
}
</div>
</div>
<div
style=
"clear:both"
></div>
{
block
name
=
description_update
}
<br/>
<div
style=
"float:right;"
>
{
if
$is_project_admin
}
<button
id=
"add_file"
type=
"button"
class=
"btn btn-small btn-primary"
><i
class=
"icon-plus icon-white"
></i>
add files
</button>
{/
if
}
</div>
{/
block
}
{
block
name
=
content
}
<ul
id=
"myTab"
class=
"nav nav-tabs"
>
<li
class=
"active"
><a
href=
"#downloads"
data-toggle=
"tab"
>
Downloads
</a></li>
{
if
$analyse.params
!=
""
}
<li><a
href=
"#parameters"
data-toggle=
"tab"
>
Parameters
</a></li>
{/
if
}
</ul>
<div
id=
"myTabContent"
class=
"tab-content"
>
<div
class=
"tab-pane fade in active"
id=
"downloads"
>
{
assign
var
=
"nb_files"
value
=
0
}
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
""
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$nb_files
=
$nb_files
+
1
}
{/
if
}
{/
foreach
}
{
if
$nb_files
==
0
}
<div
class=
"alert alert-info"
>
Results folder not synchronized yet...
</div>
{
else
}
<ul>
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
""
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<li
class=
"filelist"
><a
href=
"
{
$link
}
"
>
{
$file
}
</a>
</li>
{/
if
}
{/
foreach
}
</ul>
{/
if
}
</div>
{
if
$analyse.params
!=
""
}
<div
class=
"tab-pane fade"
id=
"parameters"
>
{
assign
var
=
"params"
value
=
";"
|
explode
:
$analyse.params
}
<ul>
{
foreach
from
=
$params
item
=
param
}
<li
class=
"parameter"
>
{
$param
}
</li>
{/
foreach
}
</ul>
</div>
{/
if
}
</div>
{/
block
}
\ No newline at end of file
{* No result tab*}
{
block
name
=
nav_menu_results
}{/
block
}
{
block
name
=
tab_content_results
}{/
block
}
\ No newline at end of file
ui/nG6/res/js/tx_nG6_pi1_analysis.js
View file @
c4102f5a
...
...
@@ -212,6 +212,12 @@ $(function () {
$
(
this
).
editable
(
'
show
'
);
})
//auto active tab
var
href
=
$
(
'
#myTab > li
'
).
removeClass
(
"
active
"
).
first
().
addClass
(
"
active
"
).
children
(
"
a:first
"
).
attr
(
'
href
'
);
$
(
'
#myTabContent > div.tab-pane.fade
'
).
removeClass
(
"
in active
"
);
$
(
href
).
addClass
(
"
in active
"
);
// Add numeric with white space in sort
jQuery
.
extend
(
jQuery
.
fn
.
dataTableExt
.
oSort
,
{
"
numeric-pre
"
:
function
(
a
)
{
...
...
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