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workflows/radseq/__init__.py

@@ -60,11 +60,7 @@ class RADseq (BasicNG6Workflow):
                               self.args['trim'], self.args['forward']], component_prefix = pool_id)
             
         #ustacks = self.add_component("Ustacks", [self.args["read_1"]])
-        splitbc = self.add_component("SplitBC", [ pooldata['read1'], pooldata['read2'] if pooldata['read2'] else None,
-                              indivs_by_name.keys(), barcode_file, self.args['enzyme'], self.args['mismatches'], self.args['tag_mismatch'],
-                              self.args['trim'], self.args['forward']], component_prefix = pool_id)
-        ustacks = self.add_component("Ustacks" , [self.args["individu"], splitbc.output_read1, max_locus=2 ] , component_prefix = "ustacks")
-        
+        ustacks = self.add_component("Ustacks" , [], {"indiv_dic": self.args["individu"], "read1_files" : splitbc.output_read1 , "max_locus" : 3 } , component_prefix = "ustacks")
         
         #cstacks = self.add_component("Cstacks", [ustacks.alleles, ustacks.snps, ustacks.tags, self.args["catalog_mismatches"]])