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genotoul-bioinfo
ng6
Commits
c24bcf7e
Commit
c24bcf7e
authored
Feb 12, 2019
by
Maxime Manno
🍜
Browse files
ONT_QC - removed auto compression to gz
need to add --compression none
#103
parent
f025f189
Changes
1
Show whitespace changes
Inline
Side-by-side
workflows/ont_qc/__init__.py
View file @
c24bcf7e
...
...
@@ -47,7 +47,6 @@ class OntQualityCheck (NG6Workflow):
print
(
sample_names
)
print
(
self
.
summary_file
)
self
.
compression
=
"gz"
addrawfiles
=
self
.
add_component
(
"AddRawFiles"
,
[
self
.
runobj
,
self
.
get_all_reads
(),
self
.
compression
])
#nanoplot = self.add_component("Nanoplot", [sample.name,self.get_all_reads(), self.nb_threads, True, "png", self.nanoplot_color,"nanoplot.tar.gz"])
ontstat
=
self
.
add_component
(
"Run_stats"
,
[
self
.
summary_file
,
self
.
barcoded
])
...
...
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