Commit bacfcb46 authored by Penom Nom's avatar Penom Nom
Browse files

Add single-end management.

parent bcab8ff3
......@@ -130,5 +130,7 @@ class Casava18 (NG6Workflow):
bwa = self.add_component("BWA", [bwaindex.databank, filtered_read1_files, filtered_read2_files], parent = fastqilluminafilter)
# make some statistic on the alignement
alignmentstats = self.add_component("AlignmentStats", [bwa.bam_files], parent = bwa)
# process insert sizes
insertssizes = self.add_component("InsertsSizes",[bwa.bam_files, self.args["histogram_width"], self.args["min_pct"]], parent = bwa)
\ No newline at end of file
if len(self.read2_files) > 0:
# process insert sizes
insertssizes = self.add_component("InsertsSizes",[bwa.bam_files, self.args["histogram_width"], self.args["min_pct"]], parent = bwa)
\ No newline at end of file
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