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Maintenance - Mise à jour mensuelle Lundi 6 Février entre 7h00 et 9h00
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genotoul-bioinfo
ng6
Commits
b9037fb3
Commit
b9037fb3
authored
Jul 25, 2011
by
Jerome Mariette
Browse files
add datatable and summary to each run/project/analysis + change some design
parent
3217561d
Changes
37
Hide whitespace changes
Inline
Side-by-side
ui/nG6/class.tx_nG6_eid.php
View file @
b9037fb3
...
...
@@ -120,12 +120,6 @@ class tx_nG6_eid {
}
else
{
print
"pid="
.
$process
->
getPid
()
.
"&archive_path="
.
$archive_path
;
}
// If file information is requested
}
else
if
(
$type
==
'get_file_size'
)
{
$ids
=
trim
(
t3lib_div
::
_GP
(
'ids'
));
$data_folder
=
trim
(
t3lib_div
::
_GP
(
'data_folder'
));
print
$this
->
get_file_size
(
$user_group
,
$ids
,
$data_folder
);
// If asked to hide a {project/run}
}
else
if
(
$type
==
'hide'
)
{
...
...
@@ -323,29 +317,6 @@ class tx_nG6_eid {
return
0
;
}
/**
* for each $id, get the total size of all files in the corresponding folder
*
* @param string $user_group the user group
* @param string $ids names of run or analysis for which we want to get the sizes of the contained files
* @param string $data_folder root directory where the folders of the runs and analysis can be found
* @return integer total size of the files
*/
function
get_file_size
(
$user_group
,
$ids
,
$data_folder
)
{
// First get the directories structure
$directories
=
$this
->
get_directories_structure_and_content
(
$user_group
,
$ids
,
$data_folder
,
"/"
);
$full_size
=
0
;
foreach
(
$directories
[
0
]
as
$index
=>
$src_directory
)
{
// For each files in the source directory
foreach
(
scandir
(
$src_directory
)
as
$file
)
{
if
(
is_file
(
$src_directory
.
"/"
.
$file
)
and
$file
!=
"analyse.xml"
and
$file
!=
"index.html"
and
$file
!=
"run.cfg"
)
{
$full_size
+=
filesize
(
$src_directory
.
"/"
.
$file
);
}
}
}
return
$full_size
;
}
/**
* Returns a table with the right directories structure considering ids
*
...
...
ui/nG6/ext_typoscript_setup.txt
View file @
b9037fb3
plugin.tx_nG6_pi1 {
view = project
results_at_a_time = 20
}
\ No newline at end of file
ui/nG6/lib/class.tx_nG6_db.php
View file @
b9037fb3
...
...
@@ -374,6 +374,29 @@ class tx_nG6_db {
return
$res
;
}
/**
* Return the size of the project
*
* @param string $p_id the project id to return the size
* @param string $data_folder the data folder
* @param string $user_group the user group
*/
function
get_project_size
(
$p_id
,
$data_folder
,
$user_group
)
{
$full_size
=
0
;
// All runs
$project_runs
=
tx_nG6_db
::
get_project_runs
(
$user_group
,
$p_id
);
foreach
(
$project_runs
as
$run_id
=>
$run_values
)
{
$full_size
+=
tx_nG6_db
::
get_run_size
(
$run_values
[
'id'
],
$data_folder
,
$user_group
);
}
// All analysis
$project_analysis
=
tx_nG6_db
::
get_project_analysis
(
$user_group
,
$p_id
);
foreach
(
$project_analysis
as
$analyse_id
=>
$analyze_values
)
{
$full_size
+=
tx_nG6_db
::
get_analysis_size
(
$analyze_values
[
'id'
],
$data_folder
);
}
return
$full_size
;
}
/*
* Run functions
...
...
@@ -660,6 +683,29 @@ class tx_nG6_db {
return
$res
;
}
/**
* Return the size of the run
*
* @param string $r_id the run id to return the size
* @param string $data_folder the data folder
* @param string $user_group the user group
*/
function
get_run_size
(
$r_id
,
$data_folder
,
$user_group
)
{
$full_size
=
0
;
$run_analysis
=
tx_nG6_db
::
get_run_analysis
(
$user_group
,
$r_id
);
foreach
(
$run_analysis
as
$analyse_id
=>
$analyze_values
)
{
$full_size
+=
tx_nG6_db
::
get_analysis_size
(
$analyze_values
[
'id'
],
$data_folder
);
}
// Then select the run
$my_run
=
tx_nG6_db
::
select_run
(
$r_id
);
foreach
(
scandir
(
$data_folder
.
$my_run
[
'directory'
])
as
$file
)
{
if
(
is_file
(
$data_folder
.
$my_run
[
'directory'
]
.
"/"
.
$file
))
{
$full_size
+=
filesize
(
$data_folder
.
$my_run
[
'directory'
]
.
"/"
.
$file
);
}
}
return
$full_size
;
}
/**
* Hide a run and sublevels (analysis)
*
...
...
@@ -822,6 +868,24 @@ class tx_nG6_db {
return
$result
;
}
/**
* Return the size of the analysis
*
* @param string $a_id the analysis id to return the size
* @param string $data_folder the data folder
*/
function
get_analysis_size
(
$a_id
,
$data_folder
)
{
// First select the analyse
$my_analysis
=
tx_nG6_db
::
select_analyse
(
$a_id
);
$full_size
=
0
;
foreach
(
scandir
(
$data_folder
.
$my_analysis
[
'directory'
])
as
$file
)
{
if
(
is_file
(
$data_folder
.
$my_analysis
[
'directory'
]
.
"/"
.
$file
))
{
$full_size
+=
filesize
(
$data_folder
.
$my_analysis
[
'directory'
]
.
"/"
.
$file
);
}
}
return
$full_size
;
}
/**
* Hide an analysis
*
...
...
ui/nG6/lib/class.tx_nG6_utils.php
View file @
b9037fb3
...
...
@@ -79,6 +79,22 @@ class tx_nG6_utils {
return
0
;
}
/**
* Return the string representation of a byte
*
* @param string $size
*/
function
get_octet_string_representation
(
$size
)
{
$octets_link
=
array
(
"bytes"
,
"Kb"
,
"Mb"
,
"Gb"
,
"Tb"
,
"Pb"
,
"Eb"
,
"Zb"
);
$p
=
(
int
)(
ceil
((
float
)(
strlen
(
strval
(
$size
)))
/
(
float
)(
3
)
-
(
float
)(
1
)));
$pow_needed
=
$p
*
10
;
$pow_needed
=
pow
(
2
,
$pow_needed
);
$value
=
(
float
)(
$size
)
/
(
float
)(
$pow_needed
);
$tmp
=
explode
(
"."
,
$value
);
$value
=
$tmp
[
0
]
.
"."
.
substr
(
$tmp
[
1
],
0
,
2
);
$value
=
$value
.
" "
.
$octets_link
[
$p
];
return
$value
;
}
}
if
(
defined
(
'TYPO3_MODE'
)
&&
$TYPO3_CONF_VARS
[
TYPO3_MODE
][
'XCLASS'
][
'ext/nG6/class.tx_nG6_utils.php'
])
{
...
...
ui/nG6/pi1/analyzes/AdaptorcleanerAnalyse.tpl
View file @
b9037fb3
...
...
@@ -16,13 +16,18 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
*}
<div
id=
"img_dialog"
title=
""
></div>
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
<div
class=
"tx-nG6-pi1-singleView"
>
<h2>
Analyse
{
$analyse.name
}
:
<span>
{
$analyse.description
}
</span>
</h2>
<div
class=
"analysis"
>
<h2>
{
$llang.analyse
}
{
$analyse.name
}
:
</h2>
<p><strong>
{
$analyse.description
}
</strong>
<br
/>
<br
/>
{($llang.analyse_desc|replace:"###ANALYSE_SIZE###":"
<strong>
###ANALYSE_SIZE###
</strong>
")|replace:"###ANALYSE_SIZE###":$analyse_size}
</p>
</div>
<h3>
{
$llang.AdaptorcleanerAnalyse_params_title
}
</h3>
<div
class=
"underline"
>
</div>
{
assign
var
=
"params"
value
=
" "
|
explode
:
$analyse.params
}
<ul>
{
assign
var
=
"score_index"
value
=
$params
|@
array_keys
:
"--score"
}
...
...
@@ -48,6 +53,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{
assign
var
=
"analyse_results_sorted"
value
=
$analyse_results
|@
ksort
}
<h3>
{
$llang.AdaptorcleanerAnalyse_result_title
}
</h3>
<div
class=
"underline"
>
</div>
<table
class=
"tx-nG6-pi1-listrow"
>
<tr>
{
if
$analyse_results
|@
count
>
1
}
...
...
@@ -74,6 +80,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</table>
<h3>
{
$llang.AdaptorcleanerAnalyse_adaptor_title
}
</h3>
<div
class=
"underline"
>
</div>
{* First find out all adaptors used *}
{
assign
var
=
"adaptors"
value
=
array
()
}
{
foreach
from
=
$analyse_results
key
=
sample
item
=
sample_results
}
...
...
@@ -105,10 +112,13 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</table>
<h3>
{
$llang.Analyse_archives_title
}
</h3>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<a
href=
"
{
$link
}
"
>
{
$file
}
</a>
<br
/>
{/
if
}
{/
foreach
}
<div
class=
"underline"
>
</div>
<p><ul>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<li><a
href=
"
{
$link
}
"
>
{
$file
}
</a>
</li>
{/
if
}
{/
foreach
}
</ul></p>
ui/nG6/pi1/analyzes/BWAContaminationSearchAnalyse.tpl
View file @
b9037fb3
...
...
@@ -16,13 +16,18 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
*}
<div
id=
"img_dialog"
title=
""
></div>
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
<div
class=
"tx-nG6-pi1-singleView"
>
<h2>
Analyse
{
$analyse.name
}
:
<span>
{
$analyse.description
}
</span>
</h2>
<div
class=
"analysis"
>
<h2>
{
$llang.analyse
}
{
$analyse.name
}
:
</h2>
<p><strong>
{
$analyse.description
}
</strong>
<br
/>
<br
/>
{($llang.analyse_desc|replace:"###ANALYSE_SIZE###":"
<strong>
###ANALYSE_SIZE###
</strong>
")|replace:"###ANALYSE_SIZE###":$analyse_size}
</p>
</div>
<h3>
{
$llang.BWAContaminationSearchAnalyse_result_title
}
</h3>
<div
class=
"underline"
>
</div>
{* First find out all databse used *}
{
assign
var
=
"database"
value
=
array
()
}
{
foreach
from
=
$analyse_results
key
=
sample
item
=
sample_results
}
...
...
@@ -60,10 +65,13 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</table>
<h3>
{
$llang.Analyse_archives_title
}
</h3>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<a
href=
"
{
$link
}
"
>
{
$file
}
</a>
<br
/>
{/
if
}
{/
foreach
}
\ No newline at end of file
<div
class=
"underline"
>
</div>
<p><ul>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<li><a
href=
"
{
$link
}
"
>
{
$file
}
</a>
</li>
{/
if
}
{/
foreach
}
</ul></p>
\ No newline at end of file
ui/nG6/pi1/analyzes/BasicAnalyse.tpl
View file @
b9037fb3
...
...
@@ -16,22 +16,30 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
*}
<div
id=
"img_dialog"
title=
""
></div>
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
<div
class=
"tx-nG6-pi1-singleView"
>
<h2>
Analyse
{
$analyse.name
}
:
<span>
{
$analyse.description
}
</span>
</h2>
<div
class=
"analysis"
>
<h2>
{
$llang.analyse
}
{
$analyse.name
}
:
</h2>
<p><strong>
{
$analyse.description
}
</strong>
<br
/>
<br
/>
{($llang.analyse_desc|replace:"###ANALYSE_SIZE###":"
<strong>
###ANALYSE_SIZE###
</strong>
")|replace:"###ANALYSE_SIZE###":$analyse_size}
</p>
</div>
<h3>
{
$llang.Analyse_params
}
</h3>
<div
class=
"underline"
>
</div>
<ul>
<li>
{
$analyse.params
}
</li>
</ul>
<h3>
{
$llang.Analyse_archives_title
}
</h3>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<a
href=
"
{
$link
}
"
>
{
$file
}
</a>
<br
/>
{/
if
}
{/
foreach
}
<div
class=
"underline"
>
</div>
<p><ul>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<li><a
href=
"
{
$link
}
"
>
{
$file
}
</a>
</li>
{/
if
}
{/
foreach
}
</ul></p>
\ No newline at end of file
ui/nG6/pi1/analyzes/BlastContaminationSearchAnalyse.tpl
View file @
b9037fb3
...
...
@@ -16,13 +16,18 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
*}
<div
id=
"img_dialog"
title=
""
></div>
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
<div
class=
"tx-nG6-pi1-singleView"
>
<h2>
Analyse
{
$analyse.name
}
:
<span>
{
$analyse.description
}
</span>
</h2>
<div
class=
"analysis"
>
<h2>
{
$llang.analyse
}
{
$analyse.name
}
:
</h2>
<p><strong>
{
$analyse.description
}
</strong>
<br
/>
<br
/>
{($llang.analyse_desc|replace:"###ANALYSE_SIZE###":"
<strong>
###ANALYSE_SIZE###
</strong>
")|replace:"###ANALYSE_SIZE###":$analyse_size}
</p>
</div>
<h3>
{
$llang.BlastContaminationSearchAnalyse_params_title
}
</h3>
<div
class=
"underline"
>
</div>
{
assign
var
=
"params"
value
=
";"
|
explode
:
$analyse.params
}
<ul>
<li>
{
$params
[
0
]
}
</li>
...
...
@@ -30,6 +35,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</ul>
<h3>
{
$llang.BlastContaminationSearchAnalyse_result_title
}
</h3>
<div
class=
"underline"
>
</div>
{* First find out all databse used *}
{
assign
var
=
"database"
value
=
array
()
}
{
foreach
from
=
$analyse_results
key
=
sample
item
=
sample_results
}
...
...
@@ -67,10 +73,13 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</table>
<h3>
{
$llang.Analyse_archives_title
}
</h3>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<a
href=
"
{
$link
}
"
>
{
$file
}
</a>
<br
/>
{/
if
}
{/
foreach
}
\ No newline at end of file
<div
class=
"underline"
>
</div>
<p><ul>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<li><a
href=
"
{
$link
}
"
>
{
$file
}
</a>
</li>
{/
if
}
{/
foreach
}
</ul></p>
\ No newline at end of file
ui/nG6/pi1/analyzes/CutAdaptAnalyse.tpl
View file @
b9037fb3
...
...
@@ -16,13 +16,18 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
*}
<div
id=
"img_dialog"
title=
""
></div>
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
<div
class=
"tx-nG6-pi1-singleView"
>
<h2>
Analyse
{
$analyse.name
}
:
<span>
{
$analyse.description
}
</span>
</h2>
<div
class=
"analysis"
>
<h2>
{
$llang.analyse
}
{
$analyse.name
}
:
</h2>
<p><strong>
{
$analyse.description
}
</strong>
<br
/>
<br
/>
{($llang.analyse_desc|replace:"###ANALYSE_SIZE###":"
<strong>
###ANALYSE_SIZE###
</strong>
")|replace:"###ANALYSE_SIZE###":$analyse_size}
</p>
</div>
<h3>
{
$llang.CutAdaptAnalyse_params_title
}
</h3>
<div
class=
"underline"
>
</div>
{
assign
var
=
"params"
value
=
" "
|
explode
:
$analyse.params
}
{
assign
var
=
"error_index"
value
=
$params
|@
array_keys
:
"-e"
}
{
assign
var
=
"min_index"
value
=
$params
|@
array_keys
:
"-m"
}
...
...
@@ -35,6 +40,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</ul>
<h3>
{
$llang.CutAdaptAnalyse_result_title
}
</h3>
<div
class=
"underline"
>
</div>
<table
class=
"tx-nG6-pi1-listrow"
>
<tr>
{
if
$analyse_results
|@
count
>
1
}
...
...
@@ -72,10 +78,13 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{/
if
}
<h3>
{
$llang.Analyse_archives_title
}
</h3>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<a
href=
"
{
$link
}
"
>
{
$file
}
</a>
<br
/>
{/
if
}
{/
foreach
}
\ No newline at end of file
<div
class=
"underline"
>
</div>
<p><ul>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<li><a
href=
"
{
$link
}
"
>
{
$file
}
</a>
</li>
{/
if
}
{/
foreach
}
</ul></p>
\ No newline at end of file
ui/nG6/pi1/analyzes/FastqcAnalyse.tpl
View file @
b9037fb3
...
...
@@ -15,14 +15,19 @@ You should have received a copy of the GNU General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
*}
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
<div
id=
"img_dialog"
title=
""
></div>
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
<div
class=
"tx-nG6-pi1-singleView"
>
<h2>
Analyse
{
$analyse.name
}
:
<span>
{
$analyse.description
}
</span>
</h2>
<div
class=
"analysis"
>
<h2>
{
$llang.analyse
}
{
$analyse.name
}
:
</h2>
<p><strong>
{
$analyse.description
}
</strong>
<br
/>
<br
/>
{($llang.analyse_desc|replace:"###ANALYSE_SIZE###":"
<strong>
###ANALYSE_SIZE###
</strong>
")|replace:"###ANALYSE_SIZE###":$analyse_size}
</p>
</div>
<h3>
{
$llang.FastqcAnalyse_stat_title
}
</h3>
<div
class=
"underline"
>
</div>
<table
class=
"tx-nG6-pi1-listrow"
>
<tr>
{
if
$analyse_results
|@
count
>
1
}
...
...
@@ -93,10 +98,13 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</div>
<h3>
{
$llang.Analyse_archives_title
}
</h3>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<a
href=
"
{
$link
}
"
>
{
$file
}
</a>
<br
/>
{/
if
}
{/
foreach
}
<div
class=
"underline"
>
</div>
<p><ul>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<li><a
href=
"
{
$link
}
"
>
{
$file
}
</a></li>
{/
if
}
{/
foreach
}
</ul></p>
ui/nG6/pi1/analyzes/IlluminaMidSearchAnalyse.tpl
View file @
b9037fb3
...
...
@@ -16,13 +16,18 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
*}
<div
id=
"img_dialog"
title=
""
></div>
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
<div
class=
"tx-nG6-pi1-singleView"
>
<h2>
Analyse
{
$analyse.name
}
:
<span>
{
$analyse.description
}
</span>
</h2>
<div
class=
"analysis"
>
<h2>
{
$llang.analyse
}
{
$analyse.name
}
:
</h2>
<p><strong>
{
$analyse.description
}
</strong>
<br
/>
<br
/>
{($llang.analyse_desc|replace:"###ANALYSE_SIZE###":"
<strong>
###ANALYSE_SIZE###
</strong>
")|replace:"###ANALYSE_SIZE###":$analyse_size}
</p>
</div>
<h3>
{
$llang.IlluminaMidSearchAnalyse_result_title
}
</h3>
<div
class=
"underline"
>
</div>
{* First find out all mid names tested *}
{
assign
var
=
"mids"
value
=
array
()
}
{
foreach
from
=
$analyse_results
key
=
sample
item
=
sample_results
}
...
...
@@ -50,10 +55,13 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</table>
<h3>
{
$llang.Analyse_archives_title
}
</h3>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<a
href=
"
{
$link
}
"
>
{
$file
}
</a>
<br
/>
{/
if
}
{/
foreach
}
<div
class=
"underline"
>
</div>
<p><ul>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<li><a
href=
"
{
$link
}
"
>
{
$file
}
</a>
</li>
{/
if
}
{/
foreach
}
</ul></p>
\ No newline at end of file
ui/nG6/pi1/analyzes/MidsContaminationSearchAnalyse.tpl
View file @
b9037fb3
...
...
@@ -16,13 +16,18 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
*}
<div
id=
"img_dialog"
title=
""
></div>
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
<div
class=
"tx-nG6-pi1-singleView"
>
<h2>
Analyse
{
$analyse.name
}
:
<span>
{
$analyse.description
}
</span>
</h2>
<div
class=
"analysis"
>
<h2>
{
$llang.analyse
}
{
$analyse.name
}
:
</h2>
<p><strong>
{
$analyse.description
}
</strong>
<br
/>
<br
/>
{($llang.analyse_desc|replace:"###ANALYSE_SIZE###":"
<strong>
###ANALYSE_SIZE###
</strong>
")|replace:"###ANALYSE_SIZE###":$analyse_size}
</p>
</div>
<h3>
{
$llang.MidsContaminationSearchAnalyse_result_title
}
</h3>
<div
class=
"underline"
>
</div>
{* First find out all mid names tested *}
{
assign
var
=
"mids"
value
=
array
()
}
{
foreach
from
=
$analyse_results
key
=
sample
item
=
sample_results
}
...
...
@@ -50,10 +55,13 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</table>
<h3>
{
$llang.Analyse_archives_title
}
</h3>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<a
href=
"
{
$link
}
"
>
{
$file
}
</a>
<br
/>
{/
if
}
{/
foreach
}
<div
class=
"underline"
>
</div>
<p><ul>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<li><a
href=
"
{
$link
}
"
>
{
$file
}
</a>
</li>
{/
if
}
{/
foreach
}
</ul></p>
ui/nG6/pi1/analyzes/PyrocleanerAnalyse.tpl
View file @
b9037fb3
...
...
@@ -16,13 +16,18 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
*}
<div
id=
"img_dialog"
title=
""
></div>
<input
type=
"hidden"
id=
"analyse_name"
value=
"
{
$analyse.name
}
"
/>
<div
class=
"tx-nG6-pi1-singleView"
>
<h2>
Analyse
{
$analyse.name
}
:
<span>
{
$analyse.description
}
</span>
</h2>
<div
class=
"analysis"
>
<h2>
{
$llang.analyse
}
{
$analyse.name
}
:
</h2>
<p><strong>
{
$analyse.description
}
</strong>
<br
/>
<br
/>
{($llang.analyse_desc|replace:"###ANALYSE_SIZE###":"
<strong>
###ANALYSE_SIZE###
</strong>
")|replace:"###ANALYSE_SIZE###":$analyse_size}
</p>
</div>
<h3>
{
$llang.PyrocleanerAnalyse_params_title
}
</h3>
<div
class=
"underline"
>
</div>
{
assign
var
=
"params"
value
=
" "
|
explode
:
$analyse.params
}
<ul>
{
if
in_array
(
"--clean-length-std"
,
$params
)
}
...
...
@@ -67,6 +72,7 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
</ul>
<h3>
{
$llang.PyrocleanerAnalyse_result_title
}
</h3>
<div
class=
"underline"
>
</div>
<table
class=
"tx-nG6-pi1-listrow"
>
<tr>
{
if
$analyse_results
|@
count
>
1
}
...
...
@@ -202,10 +208,13 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
{/
if
}
<h3>
{
$llang.Analyse_archives_title
}
</h3>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<a
href=
"
{
$link
}
"
>
{
$file
}
</a>
<br
/>
{/
if
}
{/
foreach
}
\ No newline at end of file
<div
class=
"underline"
>
</div>
<p><ul>
{
$dir
=
$data_folder
|
cat
:
$analyse.directory
}
{
foreach
$dir
|
scandir
as
$file
}
{
if
$file
!=
"."
and
$file
!=
".."
and
(
$file
|
substr
:-
strlen
(
".png"
))
!=
".png"
}
{
$link
=((
'fileadmin'
|
cat
:
$analyse.directory
)|
cat
:
'/'
)|
cat
:
$file
}
<li><a
href=
"
{
$link
}
"
>
{
$file
}
</a>
</li>
{/
if
}
{/
foreach
}
</ul></p>
\ No newline at end of file
ui/nG6/pi1/analyzes/ReadStatAnalyse.tpl
View file @
b9037fb3
...
...
@@ -16,14 +16,19 @@ along with this program. If not, see <http://www.gnu.org/licenses/>.
*}
<div
id=
"img_dialog"
title=
""
></div>