Commit b424e03a authored by Jerome Mariette's avatar Jerome Mariette
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<p>
Extract sequences from fastq files into FASTA, FASTA quality format.
TODO
</p>
<h3>input</h3>
<p>
This component calls the python script fastq_extract.py to extract sequences from fastq files.
fastq_extract.py allows these types of input:
TODO
</p>
<ul>
<li>the fastq file to extract data from</li>
</ul>
<h3>output</h3>
<p>
The sequences extracted into a FASTA and a FASTA quality format files.
TODO
</p>
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<p>
Extract sequences into a file filtered if found in the blast result
TODO
</p>
<h3>input</h3>
<p>
This component calls the m8_extractor.py script. It allows these types of input:
TODO
</p>
<ul>
<li>the file to filter</li>
<li>the blast file to use to filter</li>
</ul>
<h3>output</h3>
<p>
The file filtered.
TODO
</p>
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