The switchspaceid workflow has been made to update the paths to the

migrated analysis files (broken links and missing files).

Issue#129

src/ng6/analysis.py

@@ -622,7 +622,7 @@ class Analysis (Component):
                 file_name = os.path.basename(file)
             else :
                 copyfile(file, os.path.join(self.__get_work_directory(), file_name))
-            return 'fileadmin' + os.path.join(self.directory, file_name)
+            return self.get_full_filepath(file_name, 'fileadmin')
 
     def _save_files(self, files, gzip=False):
         """
@@ -722,6 +722,8 @@ class Analysis (Component):
             return t3mysql.select_analysis_directory(str(self.id))
     
     def change_space (self, space_id ):
+        import os
+        from ng6.project import Project
         ng6conf = NG6ConfigReader()
         
         old_path = ng6conf.get_save_directory() + self.directory
@@ -749,6 +751,21 @@ class Analysis (Component):
         
         t3mysql = t3MySQLdb()
         t3mysql.update_fields('tx_nG6_analyze', str(self.id), ['directory','retention_date'], [str("/"+new_relative_path),new_retention] )
+        
+        old_dir_name = self.__get_save_directory()
+        new_dir_name = ng6conf.get_space_directory(space_id)
+        
+        result_files = t3mysql.get_analysis_result_files(str(self.id), 'fileadmin')
+        for result_file in result_files :
+            filename = os.path.basename(result_file['rvalue'])
+            new_filepath = self.get_full_filepath(filename)
+            print("new_filepath = " + str(new_filepath))
+            print("result uid = " + str(result_file['uid']))
+            t3mysql.update_fields('tx_nG6_result', str(result_file['uid']), ['rvalue'], [str(new_filepath)] )
             
         return [retcode, str_cmd]
     
+    def get_full_filepath(self, file_name, base_filepath='fileadmin' ):
+        return base_filepath + os.path.join(self.directory, file_name)
+        
+        
\ No newline at end of file

src/ng6/t3MySQLdb.py

@@ -1066,4 +1066,16 @@ class t3MySQLdb(object):
         qresult = self.execute(sql)
         return [ r[0] for r in qresult.rows ]
         
+    def get_analysis_result_files(self, analysis_id, base_filepath = 'fileadmin'):
+        sql = "SELECT uid, rvalue FROM tx_nG6_result WHERE analyze_id='"+str(analysis_id)+"' AND rvalue LIKE '"+str(base_filepath)+"%'"  
+        print(sql)
+        qresult = self.execute(sql)
+        results = []
+        for result in qresult.rows:
+            results.append({
+                'uid'           : result[0],
+                'rvalue'        : result[1],
+            })
         
+        return results
+        
\ No newline at end of file

workflows/switch_space_id/components/move_project.py

@@ -35,7 +35,6 @@ def migrate_project (project_id, new_space_id, output):
         fh.write(log_text)
         fh.close()
         logging.getLogger("move_project.py").debug(log_text)
-        print( "os.path.exists("+log_file+")=" + str(os.path.exists(log_file)))
     
     ng6conf = NG6ConfigReader()
     base_path = ng6conf.get_save_directory()
@@ -47,6 +46,7 @@ def migrate_project (project_id, new_space_id, output):
     log_to_output_files(str_log, output)
        
     runs = project.get_runs()
+    #print(runs)
     for run in runs :
         str_log="\t -  ##RUN '" + run.name + "' (" + str(run.id) + ") - " + run.directory + "\n"
         log_to_output_files(str_log, output)
@@ -66,6 +66,8 @@ def migrate_project (project_id, new_space_id, output):
         
     analyzes = project.get_analysis()
     for analysis in analyzes :
+        print(analysis.results)
+        
         str_log="\t - ##ANALYSE PROJECT '" + analysis.name + "' (" + str(analysis.id) + ") - " + analysis.directory + "\n"
         log_to_output_files(str_log, output)