Commit b2a851ca authored by Penom Nom's avatar Penom Nom
Browse files

Add component prefix to trimSeqFasta.

parent 69cbd1e4
......@@ -28,7 +28,7 @@ class RNAdiversity (NG6Workflow):
'sample_barcodes':self.args["sample_barcodes"]},parent = sff_pre_treatment)
# elif self.args["input_files"].endswith('.fasta'):
# trim_fasta = self.add_component("MothurTrimSeqs", kwargs={'fasta_files':self.args["input_files"],'forward_primer':self.args["forward_primer"],\
# 'reverse_primer':self.args["reverse_primer"]})
# 'reverse_primer':self.args["reverse_primer"]}, component_prefix="fasta")
uniqueseqs = self.add_component("MothurUniqueSeqs", [trim_fasta.p_trim_fasta_files, trim_fasta.p_trim_names_files])
alignseqs = self.add_component("MothurAlign", kwargs={'fasta_files':uniqueseqs.unique_fasta_files,'reference_alignment_files':self.args["reference_alignment"],\
'names_files':uniqueseqs.unique_names_files,'groups_files':trim_fasta.p_groups_files},parent = trim_fasta)
......
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